Deep- Sea Bacteria And Their Biotechnological Potentials

Deep-sea environment characterized by its low temperature, high hydrostatic pressure, limited nutrient contents, and constant darkness has been a hostile environment for most marine microorganisms. Therefore it is a home for low temperature and high pressure-loving bacteria believed to functionally over shallow water intruders. Deep-sea has been regarded as rainforests in terms of their microbial diversity. Thus, the deep-sea should commend itself to microbiologists and biotechnologists alike as source of novel microorganisms and exploitable properties. Near Indonesia several deep-sea trenches exist with diverse environmental conditions. However, up to now there has been no effort to study the microbial communities of those deep-sea environments by Indonesian scientists. This is mainly because of the lack of knowledge in the field of deep-sea microbiology in Indonesia

Deep-sea image processing

High-resolution seafloor mapping often requires optical methods of sensing, to confirm interpretations made from sonar data. Optical digital imagery of seafloor sites can now provide very high resolution and also provides additional cues, such as color information for sediments, biota and divers rock types. During the cruise AT11-7 of the Woods Hole Oceanographic Institution (WHOI) vessel R/V Atlantis (February 2004, East Pacific Rise) visual imagery was acquired from three sources: (1) a digital still down-looking camera mounted on the submersible Alvin, (2) observer-operated 1-and 3-chip video cameras with tilt and pan capabilities mounted on the front of Alvin, and (3) a digital still camera on the WHOI TowCam (Fornari, 2003). Imagery from the first source collected on a previous cruise (AT7-13) to the Galapagos Rift at 86°W was successfully processed and mosaicked post-cruise, resulting in a single image covering area of about 2000 sq.m, with the resolution of 3 mm per pixel (Rzhanov et al., 2003). This paper addresses the issues of the optimal acquisition of visual imagery in deep-seaconditions, and requirements for on-board processing. Shipboard processing of digital imagery allows for reviewing collected imagery immediately after the dive, evaluating its importance and optimizing acquisition parameters, and augmenting acquisition of data over specific sites on subsequent dives.Images from the deepsea power and light (DSPL) digital camera offer the best resolution (3.3 Mega pixels) and are taken at an interval of 10 seconds (determined by the strobe\u27s recharge rate). This makes images suitable for mosaicking only when Alvin moves slowly (≪1/4 kt), which is not always possible for time-critical missions. Video cameras provided a source of imagery more suitable for mosaicking, despite its inferiority in resolution. We discuss required pre-processing and imageenhancement techniques and their influence on the interpretation of mosaic content. An algorithm for determination of camera tilt parameters from acquired imagery is proposed and robustness conditions are discussed

Deep- Sea Bacteria and Their Biotechnological Potentials

Deep-sea environment characterized by its low temperature, high hydrostatic pressure, limited nutrient contents, and constant darkness has been a hostile environment for most marine microorganisms. Therefore it is a home for low temperature and high pressure-loving bacteria believed to functionally over shallow water intruders. Deep-sea has been regarded as rainforests in terms of their microbial diversity. Thus, the deep-sea should commend itself to microbiologists and biotechnologists alike as source of novel microorganisms and exploitable properties. Near Indonesia several deep-sea trenches exist with diverse environmental conditions. However, up to now there has been no effort to study the microbial communities of those deep-sea environments by Indonesian scientists. This is mainly because of the lack of knowledge in the field of deep-sea microbiology in Indonesia

How Much Longer Will it Take? A Ten-year Review of the Implementation of United Nations General Assembly Resolutions 61/105, 64/72 and 66/68 on the Management of Bottom Fisheries in Areas Beyond National Jurisdiction

The United Nations General Assembly (UNGA) in 2002 adopted the first in a series of resolutions regarding the conservation of biodiversity in the deep sea. Prompted by seriousconcerns raised by scientists, non-governmental organizations (NGOs) and numerous States,these resolutions progressively committed States to act both individually and through regional fishery management organizations (RFMOs) to either manage bottom fisheries in areas beyond national jurisdiction to prevent significant adverse impacts on deep-sea species, ecosystems and biodiversity or else prohibit bottom fishing from taking place.Ten years have passed since the adoption of resolution 61/105 in 2006, calling on States to take a set of specific actions to manage bottom fisheries in areas beyond national jurisdiction to protect vulnerable marine ecosystems (VMEs) from the adverse impacts of bottom fishing and ensure the sustainability of deep-sea fish stocks. Despite the considerable progress by some RFMOs, there remain significant gaps in the implementation of key elements and commitments in the resolutions. The Deep Sea Conservation Coalition (DSCC) has prepared this report to assist the UNGA in its review in 2016 and to address the following question: How effectively have the resolutions been implemented

Signal Classification for Acoustic Neutrino Detection

This article focuses on signal classification for deep-sea acoustic neutrino detection. In the deep sea, the background of transient signals is very diverse. Approaches like matched filtering are not sufficient to distinguish between neutrino-like signals and other transient signals with similar signature, which are forming the acoustic background for neutrino detection in the deep-sea environment. A classification system based on machine learning algorithms is analysed with the goal to find a robust and effective way to perform this task. For a well-trained model, a testing error on the level of one percent is achieved for strong classifiers like Random Forest and Boosting Trees using the extracted features of the signal as input and utilising dense clusters of sensors instead of single sensors.Comment: 8 Pages, 6 Figures, ARENA 2010 Conference Proceeding

Radiocarbon dating of deep-sea corals

Deep-sea corals are a promising new archive of paleoclimate. Coupled radiocarbon and U-series dates allow ^(14)C to be used as a tracer of ocean circulation rate in the same manner as it is used in the modern ocean. Diagnetic alteration of coral skeletons on the seafloor requires a thorough cleaning of contaminating phases of carbon. In addition, 10% of the coral must be chemically leached prior to dissolution to remove adsorbed modern CO_2. A survey of modern samples from the full Δ^(14)C gradient in the deep ocean demonstrates that the coralline CaCO_3 records the radiocarbon value of the dissolved inorganic carbon

Deep Sea Sediment Gravity Flow Deposits in Gulf of Tomini, Sulawesi

Http://dx.doi.org/10.17014/ijog.vol3no4.20084Micro plate collision against the Eastern Arm of Sulawesi since Pliocene has resulted in a major supply of terigenous sediments into Late Miocene rift-basins in Gulf of Tomini. Studies on offshore multi-channel seismic reflection data complemented by published on-land geological data indicate a series of tectonic events that influenced the depositional system in the Gulf of Tomini. During the Late Neogene, alternating pulses of terigenous sediments were deposited in the basins in the form of deep-sea slump-turbidite-pelagic sediments. A sediment gravity flow deposit system at the slope and the base of the basins changed gradually into a deep-sea pelagic fill system toward the center of the basins. Three tectono-stratigraphy sequences (A, B, and C) separated by unconformities indicating the Late Neogene history and the development of the basins were identified. These tectonic processes imply that the earlier sediments in the Gulf of Tomini are accomplished by a differential subsidence, which allows a thickening of basin infill. The Pliocene-Quaternary basin fill marks the onset of a predominant gravity flow depositional syste

Impacts on the deep-sea ecosystem by a severe coastal storm

Major coastal storms, associated with strong winds, high waves and intensified currents, and occasionally with heavy rains and flash floods, are mostly known because of the serious damage they can cause along the shoreline and the threats they pose to navigation. However, there is a profound lack of knowledge on the deep-sea impacts of severe coastal storms. Concurrent measurements of key parameters along the coast and in the deep-sea are extremely rare. Here we present a unique data set showing how one of the most extreme coastal storms of the last decades lashing the Western Mediterranean Sea rapidly impacted the deep-sea ecosystem. The storm peaked the 26th of December 2008 leading to the remobilization of a shallow-water reservoir of marine organic carbon associated with fine particles and resulting in its redistribution across the deep basin. The storm also initiated the movement of large amounts of coarse shelf sediment, which abraded and buried benthic communities. Our findings demonstrate, first, that severe coastal storms are highly efficient in transporting organic carbon from shallow water to deep water, thus contributing to its sequestration and, second, that natural, intermittent atmospheric drivers sensitive to global climate change have the potential to tremendously impact the largest and least known ecosystem on Earth, the deep-sea ecosystem

Novel insights into the Thaumarchaeota in the deepest oceans: their metabolism and potential adaptation mechanisms

Background: Marine Group I (MGI) Thaumarchaeota, which play key roles in the global biogeochemical cycling of nitrogen and carbon (ammonia oxidizers), thrive in the aphotic deep sea with massive populations. Recent studies have revealed that MGI Thaumarchaeota were present in the deepest part of oceans - the hadal zone (depth > 6,000 m, consisting almost entirely of trenches), with the predominant phylotype being distinct from that in the “shallower” deep sea. However, little is known about the metabolism and distribution of these ammonia oxidizers in the hadal water. Results: In this study, metagenomic data were obtained from 0-10,500 m deep seawater samples from the Mariana Trench. The distribution patterns of Thaumarchaeota derived from metagenomics and 16S rRNA gene sequencing were in line with that reported in previous studies: abundance of Thaumarchaeota peaked in bathypelagic zone (depth 1,000 – 4,000 m) and the predominant clade shifted in the hadal zone. Several metagenome-assembled thaumarchaeotal genomes were recovered, including a near-complete one representing the dominant hadal phylotype of MGI. Using comparative genomics we predict that unexpected genes involved in bioenergetics, including two distinct ATP synthase genes (predicted to be coupled with H+ and Na+ respectively), and genes horizontally transferred from other extremophiles, such as those encoding putative di-myo-inositol-phosphate (DIP) synthases, might significantly contribute to the success of this hadal clade under the extreme condition. We also found that hadal MGI have the genetic potential to import a far higher range of organic compounds than their shallower water counterparts. Despite this trait, hadal MDI ammonia oxidation and carbon fixation genes are highly transcribed providing evidence they are likely autotrophic, contributing to the primary production in the aphotic deep sea. Conclusions: Our study reveals potentially novel adaptation mechanisms of deep-sea thaumarchaeotal clades and suggests key functions of deep-sea Thaumarchaeota in carbon and nitrogen cycling