Phylogenetic trees of <i>Jacaranda</i> populations based on different components of simple sequence repeat (SSR) data.

Abstract

<p>SSR variation (A), amplicon size variation (B), flanking region (FR) sequence variation (C) and amplicon sequence variation (D). Each type of data was analysed according to a pair of suitable genetic distance estimators: F_ST, suitable for loci following the infinite allele model (IAM); R_ST, for loci following the stepwise mutation model (SMM); and N_ST, for loci following the infinite site model (ISM) model. There are four geographic populations: Counami (<i>C</i>), Paracou (<i>P</i>) and Saint-Laurent (<i>S</i>) in French Guiana; Tapajos (<i>T</i>) in Brazil. Note that scales are not the same among trees.</p