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Evolutionary History of the Odd-Nosed Monkeys and the Phylogenetic Position of the Newly Described Myanmar Snub-Nosed Monkey Rhinopithecus strykeri

By Rasmus Liedigk, Mouyu Yang, Nina G. Jablonski, Frank Momberg, Thomas Geissmann, Ngwe Lwin, Tony Htin Hla, Zhijin Liu, Bruce Wong, Li Ming, Long Yongcheng, Ya-Ping Zhang, Tilo Nadler, Dietmar Zinner and Christian Roos

Abstract

Odd-nosed monkeys represent one of the two major groups of Asian colobines. Our knowledge about this primate group is still limited as it is highlighted by the recent discovery of a new species in Northern Myanmar. Although a common origin of the group is now widely accepted, the phylogenetic relationships among its genera and species, and the biogeographic processes leading to their current distribution are largely unknown. To address these issues, we have analyzed complete mitochondrial genomes and 12 nuclear loci, including one X chromosomal, six Y chromosomal and five autosomal loci, from all ten odd-nosed monkey species. The gene tree topologies and divergence age estimates derived from different markers were highly similar, but differed in placing various species or haplogroups within the genera Rhinopithecus and Pygathrix. Based on our data, Rhinopithecus represent the most basal lineage, and Nasalis and Simias form closely related sister taxa, suggesting a Northern origin of odd-nosed monkeys and a later invasion into Indochina and Sundaland. According to our divergence age estimates, the lineages leading to the genera Rhinopithecus, Pygathrix and Nasalis+Simias originated in the late Miocene, while differentiation events within these genera and also the split between Nasalis and Simias occurred in the Pleistocene. Observed gene tree discordances between mitochondrial and nuclear datasets, and paraphylies in the mitochondrial dataset for some species of the genera Rhinopithecus and Pygathrix suggest secondary gene flow after the taxa initially diverged. Most likely such events were triggered by dramatic changes in geology and climate within the region. Overall, our study provides the most comprehensive view on odd-nosed monkey evolution and emphasizes that data from differentially inherited markers are crucial to better understand evolutionary relationships and to trace secondary gene flow

Topics: Research Article
Publisher: Public Library of Science
OAI identifier: oai:pubmedcentral.nih.gov:3353941
Provided by: PubMed Central
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    1. (2011). A molecular phylogeny of living primates.
    2. (2011). A new species of snub-nosed monkey, genus Rhinopithecus Milne-Edwards, 1872 (Primates, Colobinae), from northern Kachin state, northeastern Myanmar.
    3. (1991). A reassessment of Megamacaca lantianensis, a large monkey from the Pleistocene of north-central China.
    4. (2004). Automatic annotation of organellar genomes with DOGMA.
    5. (2008). AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics.
    6. (2001). Bayesian inference of phylogeny and its impact on evolutionary biology.
    7. (2007). Characteristics of Pleistocene megafauna extinctions in Southeast Asia.
    8. (1993). Classification and evolution of Asian colobines.
    9. (2008). Cosmogenic nuclide dating of Sahelanthropus tchadensis and Australopithecus bahrelghazali: Mio-Pliocene hominids from Chad.
    10. (2001). Distorted drainage basins as markers of crustal strain east of the Himalayas.
    11. (2000). Encyclopedia of human evolution and prehistory.
    12. (1989). Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea.
    13. (2001). Evolution of Asian monsoons and phased uplift of the Himalaya-Tibetan plateau since Late Miocene times.
    14. (1993). Evolution of Theropithecus in the Turkana Basin. In:
    15. (1980). Fossil macaques, phyletic relationships and a scenario of deployment.
    16. (2002). Fossil Old World monkeys: The late Neogene radiation.
    17. (2006). Genetic algorithm approaches for the phylogenetic analysis of large biological sequence data sets under the maximum likelihood criterion. Austin: The
    18. (2002). Geology and palaeontology of the Upper Miocene Toros-Menalla hominid locality,
    19. (1992). Inference from iterative simulation using multiple sequences.
    20. (2009). Is the new primate genus Rungwecebus a baboon? PLoS
    21. (2011). IUCN red list of threatened species 2011.2.
    22. Maddison DR Mesquite: A modular system for evolutionary analysis, version 2.75.
    23. (2005). MAFFT version 5: Improvement in accuracy of multiple sequence alignment.
    24. (2007). Mesopithecus sivalensis from the Late Miocene of the Siwaliks.
    25. (2006). Meyer A
    26. (1998). Mitochondrial cytochrome b gene sequences of Old World monkeys: With special reference on evolution of Asian colobines.
    27. (2006). Mitochondrial data support an odd-nosed colobine clade.
    28. (2010). Mitochondrial evidence for multiple radiations in the evolutionary history of small apes.
    29. (2009). Mitochondrial phylogeography of baboons (Papio spp.) – Indication for introgressive hybridization?
    30. (2011). Mitogenomic analysis of Chinese snubnosed monkeys: Evidence of positive selection in NADH dehydrogenase genes in high-altitude adaptation.
    31. (2004). Molecular evolution and systematics of Vietnamese primates.
    32. (2001). Molecular evolution of the douc langurs.
    33. (2004). Molecular markers, natural history, and evolution.
    34. (2007). Molecular phylogeny and evolutionary history of Southeast Asian macaques forming the M. silenus group.
    35. (2007). Molecular systematics of Indochinese primates.
    36. (2003). MrBayes 3: Bayesian phylogenetic inference under mixed models.
    37. (1998). Natural history of the doucs and snub-nosed monkeys. New Jersey: World Scientific Publishing Company.
    38. (2005). New material of the earliest hominid from the Upper Miocene of Chad.
    39. (2010). New Oligocene primate from Saudi Arabia and the divergence of apes and Old World monkeys.
    40. (2011). Nuclear versus mitochondrial DNA: Evidence for hybridization in colobine monkeys.
    41. Odd-nosed Monkeys: Recent advances in the study of the forgotten colobinesNewYork:Springer In press.
    42. (2003). PAUP*: Phylogenetic analysis using parsimony (*and other methods), version 4.
    43. (2008). Phylogenetic incongruence between nuclear and mitochondrial markers in the Asian colobines and the evolution of the langurs and leaf monkeys.
    44. (2011). Phylogenetic inconsistency caused by ancient sex-biased gene migration.
    45. (2008). Phylogenetic position of the langur genera Semnopithecus and Trachypithecus among Asian colobines, and genus affiliations of their species groups.
    46. (2004). Phylogeny of snub-nosed monkeys inferred from mitochondrial DNA, cytochrome b, and 12S rRNA sequences.
    47. (2007). Phylogeography and population structure of the Yunnan snub-nosed monkey (Rhinopithecus bieti) inferred from mitochondrial control region DNA sequence analysis.
    48. (2005). Physical geography of the Gaoligong Shan area of southwest China in relation to biodiversity.
    49. (1953). Pleistocene mammals from the limestone fissures of Szechuan, China. Bull Mus Nat Hist 102: 1024. Odd-Nosed Monkey Phylogeny PLoS
    50. (2012). Population genetic structure of Guizhou snub-nosed monkeys (Rhinopithecus brelichi)a s inferred from mitochondrial control region sequences, and comparison
    51. (2001). Primate taxonomy. Washington DC: Smithsonian Institution Press.
    52. (2007). Rambaut A
    53. Rambaut A (2008) FigTree: Tree figure drawing tool, version 1.2.2.
    54. (2000). Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.
    55. (2009). Selection of models of DNA evolution with jModelTest.
    56. (2003). Species-level paraphyly and polyphyly: Frequency, causes, and consequences, with insights from animal mitochondrial DNA.
    57. (2009). The effect of landscape features on population genetic structure in Yunnan snub-nosed monkeys (Rhinopithecus bieti) implies an anthropogenic genetic discontinuity.
    58. (2006). The geography of mammals and rivers in mainland Southeast Asia.
    59. (2002). The hominoid radiation in Asia. In:
    60. (1993). The impact of late Cenozoic environmental changes in East Asia on the distribution of terrestrial plants and animals: Evolving landscapes and evolving biotas of East Asia since the mid-Tertiary.
    61. (2000). The influence of life history and diet on the distribution of catarrhine primates during the Pleistocene in eastern Asia.
    62. (2011). The Mio-Pliocene colobine monkey, Mesopithecus, in China.
    63. (2005). The phanerozoic record of global sea-level change.
    64. (1993). The phylogenetic relationships and classification of the doucs and snub-nosed langurs of China and Vietnam.
    65. (2011). The stem catarrhine Saadanius does not inform the timing of the origin of crown catarrhines.
    66. (2011). The strange blood: Natural hybridization in primates.
    67. (2007). Tracer: MCMC trace analysis tool, version

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