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A Phylometagenomic Exploration of Oceanic Alphaproteobacteria Reveals Mitochondrial Relatives Unrelated to the SAR11 Clade

By Björn Brindefalk, Thijs J. G. Ettema, Johan Viklund, Mikael Thollesson and Siv G. E. Andersson
Topics: Research Article
Publisher: Public Library of Science
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Provided by: PubMed Central

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  21. (1995). Inferring phylogenies from DNA sequences of unequal base compositions.
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  23. (2006). Kalign, Kalignvu and Mumsa: web servers for multiple sequence alignment.
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  25. (1985). Mitochondrial origins.
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  30. (1995). On the use of nucleic acid sequences to infer early branchings in the tree of life.
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  32. (2005). Phylogenetic diversity and the greedy algorithm.
  33. (2009). Prokaryotic Genomes and Diversity in the Surface Ocean: Interrogating the Global Ocean Sampling Metagenome.
  34. (1994). Reconstructing evolutionary trees from DNA and protein sequences: paralinear distances.
  35. (2003). Reconstruction of the proto-mitochondrial metabolism.
  36. (1994). Recovering evolutionary trees under a more realistic model of sequence evolution.
  37. (1998). SplitsTree: analyzing and visualizing evolutionary data.
  38. (2007). STRING 7–recent developments in the integration and prediction of protein interactions.
  39. (1992). Substitutional bias confounds inference of cyanelle origins from sequence data.
  40. (2007). Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model.
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  42. (1998). The genome sequence of Rickettsia prowazekii and the origin of mitochondria.
  43. (2002). The genus Caedibacter comprises endosymbionts of Paramecium spp. related to the Rickettsiales (Alphaproteobacteria) and to Francisella tularensis (Gammaproteobacteria).
  44. (1998). The hydrogen hypothesis for the first eukaryote.
  45. (2008). The rise of atmospheric oxygen.
  46. (2007). The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific.
  47. (2010). Uniting sex and eukaryote origins in an emerging oxygenic world.