Article thumbnail

Monophyly of clade III nematodes is not supported by phylogenetic analysis of complete mitochondrial genome sequences

By Joong-Ki Park, Tahera Sultana, Sang-Hwa Lee, Seokha Kang, Hyong Kyu Kim, Gi-Sik Min, Keeseon S Eom and Steven A Nadler
Topics: Research Article
Publisher: BioMed Central
OAI identifier:
Provided by: PubMed Central

To submit an update or takedown request for this paper, please submit an Update/Correction/Removal Request.

Suggested articles


  1. Abebe E: Composition and distribution of freeliving freshwater nematodes: global and local perspectives. In Freshwater Nematodes: Ecology and Taxonomy. Edited by: Abebe E, Traunspurger W, Andrássy I.
  2. (2003). Abs EL-Osta YG, Chilton NB: Structure and organization of the mitochondrial genome of the canine heartworm, Dirofilaria immitis. Parasitology
  3. (2003). AG: RevTrans: multiple alignment of coding DNA from aligned amino acid sequences. Nucleic Acids Res
  4. (1983). An outline classification of the phylum Nematoda.
  5. (1999). Animal mitochondrial genomes. Nucleic Acids Res
  6. (1999). Blaxter ML: Molecular analysis of nematode diversity and the evolution of parasitism. Parasitol Today
  7. (2002). Blaxter ML: Systematic position and phylogeny.
  8. (2006). Boore JL: Lophotrochozoan mitochondrial genomes.
  9. (2008). Borgonie G: Molecular phylogeny of the Tylenchina and evolution of the female gonoduct (Nematoda: Rhabtitida). Mol Phylogenet Evol
  10. (2004). Complete sequences of the highly rearranged molluscan mitochondrial genomes of the scaphopod Graptacme eborea and the bivalve Mytilus edulis. Mol Biol Evol
  11. (1997). DG: The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res
  12. (1992). DR: The mitochondrial genomes of two Nematodes, Caenorhabditis elegans and Ascaris suum. Genetics
  13. (1997). Eddy SR: tRNAscan-SE: a program for improved detection of transfer RNA genes in genome sequences. Nucleic Acids Res
  14. (2005). Evidence for multiple reversals of asymmetric mutational constraints during the evolution of the mitochondrial genome of metazoa, and consequences for phylogenetic inferences. Syst Biol
  15. (1981). General nematology
  16. (2007). Hyman BC: Mitochondrial genome haplotype hypervariation within the isopod parasitic nematode Thaumamermis cosgrovei. Genetics
  17. (2006). I: The evolutionary origins of nematodes within the order Strongylida are related to predilection sites within hosts. Mol Phylogenet Evol
  18. (1949). JG: Phylogenetic analysis of Tylenchida Thorne,
  19. (2009). JK: The mitochondrial genome sequence of Enterobius vermicularis (Nematoda. Oxyurida) - An idiosyncratic gene order and phylogenetic information for chromadorean nematodes. Gene
  20. Keys to genera of the superfamilies Rhabditoidea, Dioctophymatoidea, Trichinelloidea and Muspiceoidea.
  21. (2007). Lambshead PJD: An improved molecular phylogeny of the Nematoda with special emphasis on marine taxa. Mol Phylogenet Evol
  22. (2005). Lang BF: Poriferan mtDNA and animal phylogeny based on mitochondrial gene arrangements. Syst Biol
  23. ML: A new system for Nematoda: combining morphological characters with molecular trees, and translating clades into ranks and taxa.
  24. (2004). MrModeltest v2 Program distributed by the author Evolutionary Biology Centre, Uppsala University;
  25. Nematoda and Nematomorpha. In Ecology and Classification of North American Freshwater Invertebrates. Edited by: Thorp JH, Covich AP.
  26. Nematode higher classification as influenced by species and family concepts.
  27. (2000). Nematode parasites of vertebrates: their development and transmission. 2 edition.
  28. (2006). Nematode small subunit phylogeny correlates with alignment parameters. Syst Biol
  29. (1988). Nematode transmission patterns.
  30. (1994). Nematodes-Structure, development, classification, and phylogeny Washington: Smithsonian Institution Press;
  31. Nemic relationships. In An Introduction to Nematology. Edited by: Chitwood BG, Chitwood MB.
  32. Patterns of evolution in parasitic nematodes.
  33. (2006). Phylogeny of Arthropoda inferred from mitochondrial sequences: Strategies for limiting the misleading effects of multiple changes in pattern and rates of substitution. Mol Phylogenet Evol
  34. (2006). Phylogeny of Cephalobina (Nematoda): Molecular evidence for recurrent evolution of probolae and incongruence with traditional classifications. Mol Phylogenet Evol
  35. (2006). Phylum-wide analysis of SSU rDNA reveals deep phylogenetic relationships among nematodes and accelerated evolution toward crown clades. Mol Biol Evol
  36. (2010). Podsiadlowski L: Erosion of phylogenetic signal in tunicate mitochondrial genomes on different levels of analysis. Mol Phylogenet Evol
  37. (2011). Rampant gene rearrangement and haplotype hypervariation among nematode mitochondrial genomes. Genetica
  38. (2006). RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics
  39. RB: An integrated pipeline for nextgeneration sequencing and annotation of mitochondrial genomes.
  40. (2003). RB: The mitochondrial genome of Strongyloides stercoralis (Nematoda)-idiosyncratic gene order and evolutionary implications.
  41. (2002). RB: The mitochondrial genomes of the human hookworms, Ancylostoma duodenale and Necator americanus (Nematoda.
  42. (2008). RB: Using 454 technology for long-PCR based sequencing of the complete mitochondrial genome from single Haemonchus contortus (Nematoda). BMC Genomics
  43. (2001). RGM: A framework for soil food web diagnostics: extension of the nematode faunal analysis concept. Applied Soil Ecology
  44. (2001). Ronquist F: MrBayes: Bayesian inference of phylogeny. Bioinformatics
  45. (2006). SP: Phylogenetic relationships of Steinernema (Cephalobina: Steinernematidae) based on nuclear, mitochondrial, and morphological data. Syst Parasitol
  46. (2008). Subbotin SA: ITS2 secondary structure andphylogeny of cyst-forming nematodes of the genus Heterodera (Tylenchida: Heteroderidae). Org Divers Evol
  47. (2006). The complete mitochondrial genome of Anisakis simplex (Ascaridida. Nematoda) and phylogenetic implications.
  48. (2006). The complete mitochondrial genome of the common sea slater, Ligia oceanica (Crustacea, Isopoda) bears a novel gene order and unusual control region features.
  49. (1998). Thomas WK: A molecular evolutionary framework for the phylum Nematoda. Nature
  50. (1998). TR: The mitochondrial genome of Onchocerca volvulus: sequence, structure and phylogenetic analysis. Mol Biochem Parasitol
  51. (1994). Vrijenhoek R: DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol Mar Biol Biotechnol
  52. WH: The role of nematodes in ecosystems.
  53. (2010). WK: Diversity and distribution of nematodes associated with wild bees in Turkey. Nematology
  54. (1998). WM: Big trees from little genomes: mitochondrial gene order as a phylogenetic tool. Curr Opin Genetics Deve
  55. (2001). WM: Trichinella spiralis mtDNA: a nematode mitochondrial genome that encodes a putative ATP8 and normally structured tRNAs and has a gene arrangement relatable to those of coelomate metazoans. Genetics
  56. (2008). XQ: The complete mitochondrial genomes for three Toxocara species of human and animal health significance.