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Transcriptomic, proteomic and metabolomic analysis of UV-B signaling in maize

By Paula Casati, Mabel Campi, Darren J Morrow, John F Fernandes and Virginia Walbot
Topics: Research Article
Publisher: BioMed Central
OAI identifier: oai:pubmedcentral.nih.gov:3141669
Provided by: PubMed Central

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  1. (2004). AE: Split-plot microarray design allows sensitive detection of expression differences after ultraviolet radiation in the inbred parental lines of a key maize mapping population. Plant Cell Environ
  2. (2008). Amasino RM: Acceleration of flowering during shade-avoidance in Arabidopsis thaliana alters the balance between FLOWERING LOCUS C-mediated repression and photoperiodic induction of flowering. Plant Physiol
  3. (2003). Ballaré CL: Convergent responses to stress. Solar ultraviolet-B radiation and Manduca sexta herbivory elicit overlapping transcriptional responses in field-grown plants of Nicotiana longiflora. Plant Physiol
  4. (1997). BR: The effect of supplementary ultraviolet-B radiation on transcripts, translation and stability of chloroplast proteins and pigment formation in Pisum sativum L. J Exp Bot
  5. (2001). Churchill GA: Statistical design and the analysis of gene expression microarray data. Genet Res
  6. (2006). CONSTITUTIVELY PHOTOMORPHOGENIC1 is required for the UV-B response in Arabidopsis. Plant Cell
  7. (2009). Crosstalks between myo-Inositol metabolism, programmed cell death and basal immunity in Arabidopsis. PLoS ONE
  8. (2005). DB: the golm metabolome database. Bioinformatics
  9. (2004). F: Genome-wide analysis of gene expression reveals function of the bZIP transcription factor HY5 in the UV-B response of Arabidopsis. Proc Natl Acad Sci USA
  10. (2006). Fernie A: Gas chromatography mass spectrometry-based metabolite profiling in plants. Nat Protoc
  11. (2005). GC-MS libraries for the rapid identification of metabolites in complex biological samples. FEBS Lett
  12. (2008). Gechev TS: Chapter 3: Programmed cell death in plants. New insights into redox regulation and the role of hydrogen peroxide. Int Rev Cell Mol Biol
  13. (2003). Gene expression profiling in response to ultraviolet radiation in Zea mays genotypes with varying flavonoid content. Plant Physiol
  14. (2006). Genome wide analysis of high altitude maize and gene knockdown stocks implicates chromatin remodeling proteins in responses to UV-B. Plant J
  15. (2005). GI: A UV-B-specific signaling component orchestrates plant UV protection. Proc Natl Acad Sci USA
  16. (2009). GI: UV-B action spectrum for UVR8-mediated HY5 transcript accumulation in Arabidopsis. Photochem Photobiol
  17. (2009). Interaction of COP1 and UVR8 regulates UV-B-induced photomorphogenesis and stress acclimation in Arabidopsis.
  18. (2009). JY: Callose synthesis in higher plants. Plant Signal Behav
  19. Limma: linear models for microarray data. In Bioinformatics and Computational Biology Solutions using R and Bioconductor. Edited by: Gentleman
  20. (2008). Maize lines expressing RNAi to chromatin remodeling factors are similarly hypersensitive to UV-B radiation but exhibit distinct transcriptome responses. Epigenetics
  21. (1993). McElroy CT: Evidence of large upward trends of ultraviolet-B radiation linked to ozone depletion. Science
  22. (1997). Overexpression of D-myo-inositol-3-phosphate synthase leads to elevated levels of inositol in Arabidopsis. Plant Mol Biol
  23. (2009). Pham-Thi AT: Lipid deacylating enzymes in plants: Old activities, new genes. Plant Physiol Biochem
  24. (2010). Plant L10 ribosomal proteins have different roles during development and translation under UV-B stress. Plant Physiol
  25. (2003). Regulation of flowering time by light quality.
  26. (1995). RG: Adaptations to environmental stresses. Plant Cell
  27. (2008). Roeder RG: Epigenetics? Mediator does that too! Mol Cell
  28. (2006). Stratospheric ozone depletion. Philos Trans R Soc London B
  29. (2004). Structure and function of plant aspartic proteinases.
  30. (2009). The mediator complex subunit PFT1 is a key regulator of jasmonatedependent defense in Arabidopsis. Plant Cell
  31. (2010). Variations in constitutive and inducible UV-B tolerance; dissecting photosystem II protection in Arabidopsis thaliana accessions. Physiol Plant
  32. (2005). Walbot V: Analysis of leaf proteome after UV-B irradiation in maize lines differing in sensitivity. Mol Cel Proteomics
  33. (2005). Walbot V: Differential accumulation of maysin and rhamnosylisorientin in leaves of high altitude landraces of maize after UV-B exposure. Plant Cell Environ
  34. (2008). Walbot V: Histone acetylation and chromatin remodeling are required for UV-B-dependent transcriptional activation of regulated genes in maize. Plant Cell
  35. (2009). Walbot V: Mutator transposon activity reprograms the transcriptomes and proteomes of developing maize anthers. Plant J
  36. (2004). Walbot V: Rapid transcriptome responses of maize (Zea mays)t o UV-B in irradiated and shielded tissues. Genome Biol