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Organization and molecular evolution of a disease-resistance gene cluster in coffee trees

By Alessandra F Ribas, Alberto Cenci, Marie-Christine Combes, Hervé Etienne and Philippe Lashermes
Topics: Research Article
Publisher: BioMed Central
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Provided by: PubMed Central

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  1. (1999). A: Molecular characterisation and origin of the Coffea arabica L. genome. Molecular and General Genetics
  2. (2002). A: Toll and interleukin-1 receptor (TIR) domain-containing proteins in plants: a genomic perspective. TRENDS in Plant Science
  3. (2010). Adaptive radiation in Coffea subgenus Coffea L. (Rubiaceae) in Africa and Madagascar. Plant Syst Evol
  4. (2005). al: The R1 resistance gene cluster contains three groups of independently evolving,
  5. (2006). An annotated taxonomic conspectus of the genus Coffea (Rubiaceae).
  6. (2004). Aravind L: STAND, a class of P-loop NTPases including animal and plant regulators of programmed cell death: multiple, complex domain architectures, unusual phyletic patterns, and evolution by horizontal gene transfer.
  7. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98. Nucl Acids Symp Ser
  8. (2010). Comparative sequence analyses indicate that Coffea (Asterids) and Vitis (Rosids) derive from the same paleo-hexaploid ancestral genome. Molecular Genetics and Genomics
  9. (2004). Construction and characterisation of a BAC library for genome analysis of the allotetraploid coffee species (Coffea arabica L.). Theoretical and Applied Genetics
  10. (2010). Contrasting evolutionary patterns of the Rp1 resistance gene family in different species of Poaceae. Mol Biol Evol
  11. (2001). Contrasting modes of evolution acting on the complex N locus for rust resistance in flax.
  12. (2007). Contrasting rates of evolution in Pm3 loci from three wheat species and rice. Genetics
  13. (1998). Dangl JL: Intragenic recombination and diversifying selection contribute to the evolution of downy mildew resistance at the RPP8 locus of Arabidopsis. Plant Cell
  14. (2006). Dangl JL: The plant immune system. Nature
  15. (1999). Diversity and molecular evolution of the RPS2 resistance gene in Arabidopsis thaliana.
  16. (2009). DnaSP v.5 A software for comprehensive analysis of DNA polymorphism data. Bioinformatics
  17. (2006). DP: Recombination patterns in aphthoviruses mirror those found in other picornaviruses.
  18. (2001). Evolutionary Dynamics of Plant R-Genes.
  19. (2000). function and evolution of plant disease resistance genes. Current Opinion in Plant Biology
  20. (2009). Geffroy V: A Nomadic Subtelomeric Disease Resistance Gene Cluster in Common Bean. Plant Physiology
  21. (2005). Gene conversion and the evolution of three leucine-rich repeat gene families in Arabidopsis thaliana. Mol Biol Evol
  22. (2010). Genetic and physical mapping of the SH3 region that confers resistance to leaf rust in coffee tree (Coffea arabica L.). Tree Genetics & Genomes
  23. (2010). Genomic structure and evolution of the Pi2/9 locus in wild rice species. Theoretical and Applied Genetics
  24. (2001). Hulbert SH: Recombination between paralogues at the rp1 rust resistance locus in maize. Genetics
  25. (1999). Identification of regions in alleles of the flax rust resistance gene L that determine differences in gene-forgene specificity. Plant Cell
  26. (2004). Introgression molecular analysis of a leaf rust resistance gene from Coffea liberica into C. arabica L. Theoretical and Applied Genetics
  27. (2007). Introgressive hybridization between the allotetraploid Coffea arabica and one of its diploid ancestors, Coffea canephora, in an exceptional sympatric zone in New Caledonia. Genome
  28. (2008). J-Q: Recent duplications dominate NBS-encoding gene expansion in two woody species. Molecular Genetics and Genomics
  29. (2004). JG: Origin and maintenance of a broad-spectrum disease resistance locus in Arabidopsis. Mol Biol Evol
  30. (1987). JLA: A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin
  31. (2000). Klessig DF: Members of the Arabidopsis HRT/RPP8 family of resistance genes confer resistance to both viral and oomycete pathogens. Plant Cell
  32. (2007). Lashermes P: Use of fluorescence in situ hybridization as a tool for introgression analysis and chromosome identification in coffee (C. arabica L.). Genome
  33. (1998). Meyers BC: Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death process. Genome Res
  34. (2003). Michelmore R: Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis. Plant Cell
  35. (2002). Michelmore RW: Dm3 is one member of a large constitutively-expressed family of NBS-LRR encoding genes. Mol Plant Microbe Interact
  36. (2008). Michelmore RW: Frequent sequence exchanges between homologs of RPP8 in Arabidopsis are not necessarily associated with genomic proximity.
  37. (2003). Michelmore RW: Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis. Plant Cell
  38. (2004). Michelmore RW: Multiple genetic processes result in heterogeneous rates of evolution within the major cluster disease resistance genes in lettuce. Plant Cell
  39. (2006). Michelmore RW: Plant NBS-LRR proteins: adaptable guards. Genome Biol
  40. (2002). Mode of amplification and reorganization of resistance genes during recent Arabidopsis thaliana evolution. Mol Biol Evol
  41. (2009). Molecular analysis of a large subtelomeric nucleotide-bindingsite-leucine-rich-repeat family in two representative genotypes of the major gene pools of Phaseolus vulgaris. Genetics
  42. (1989). Molecular cloning: a laboratory manual. Nework:
  43. (1987). Molecular Evolutionary Genetics.
  44. (2005). Nandety RS: Evolving disease resistance genes. Current Opinion in Plant Biology
  45. (1999). ND: Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotide-binding superfamily. Plant J
  46. (1997). Novel disease resistance specificities result from sequence exchange between tandemly repeated genes at the Cf-4/9 locus of tomato. Cell
  47. (2004). Origin and Maintenance of a Broad-Spectrum Disease Resistance Locus in Arabidopsis. Mol Biol Evol
  48. (2000). PC: The evolution of disease resistance genes. Plant Molecular Biology
  49. (2001). PJGM: Identification of distinct specificity determinants in resistance protein Cf-4 allows construction of a Cf-9 mutant that confers recognition of avirulence protein AVR4. Plant Cell
  50. (1997). Plant Disease Resistance Genes. Annu Rev Plant Physiol Plant Mol Biol
  51. (2001). Plant pathogens and integrated defence responses to infection. Nature
  52. (1999). PN: Identification of regions in alleles of the flax rust resistance gene L that determine differences in gene-for-gene specificity. Plant Cell
  53. (1991). Predicting coiled coil from protein sequences. Science
  54. (1999). Pronounced intraspecific haplotype divergence at the RPP5 complex disease resistance locus in Arabidopsis. Plant Cell
  55. (2006). Rapid generation of new powdery mildew resistance genes after wheat domestication.
  56. (2004). Rearrangements in the Cf-9 Disease resistance gene cluster of wild tomato have resulted in three genes that mediate Avr9 responsiveness. Genetics
  57. (2008). Recent duplications dominate NBS-encoding gene expansion in two woody species. Molecular Genetics and Genomics
  58. (2006). Recent insights into R gene evolution. Molecular Plant Pathology
  59. (1999). Recombination between diverged clusters of the tomato Cf-9 plant disease resistance gene family.
  60. (2005). Rensink W, et al: The R1 resistance gene cluster contains three groups of independently evolving, type I R1 homologues and shows substantial structural variation among haplotypes of Solanum demissum.
  61. (2001). Resistance gene complexes: Evolution and Utilization. Annual Review of Phytopathology
  62. (2007). S: MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol
  63. (2008). SB: Identification and characterization of nucleotide-binding site-Leucine-rich repeat genes in the model plant Medicago truncatula. Plant Physiology
  64. (2005). State-of-art of developing durable resistance to biotrophic pathogens in crop plants, such as coffee leaf rust. In Durable resistance to coffee leaf rust. Edited by: Zambolim L, Zambolim EM, Várzea VMP. Viçosa: Universidade Federal de Viçosa;
  65. (1989). Statistical test for detecting gene conversion. Mol Biol and Evolution
  66. (2010). Strong Positive Selection Drives Rapid Diversification of R-Genes in Arabidopsis Relatives.
  67. (2000). T: The generation of plant disease resistance gene specificities. Trends Plant Sci
  68. (2008). The coiled-coil and nucleotide binding domains of the potato Rx disease resistance protein function in pathogen recognition and signaling. Plant Cell
  69. (2002). The Ka/Ks ratio: diagnosing the form of sequence evolution. Trends in Genetics
  70. (1998). The major resistance gene cluster in lettuce is highly duplicated and spans several megabases. Plant Cell
  71. (1997). The role of leucine-rich repeat proteins in plant defenses. Adv Bot Res
  72. (1996). The Staden Sequence Analysis Package. Mol Biotechnol
  73. (1998). Three genes of the Arabidopsis RPP1 complex resistance locus recognize distinct Peronospora parasitica avirulence determinants. Plant Cell
  74. (2004). Tian D: Genomewide identification of NBS genes in japonica rice reveals significant expansion of divergent non-TIR NBS-LRR genes. Molecular Genetics and Genomics
  75. (2003). Understanding the functions of plant disease resistance proteins. Annual Review of Plant Biology
  76. (2007). VM: Introgressed and endogenous Mi-1 gene clusters in tomato differ by complex rearrangements in flanking sequences and show sequence exchange and diversifying selection among homologues. Theoretical and Applied Genetics
  77. (2003). Woffenden BJ: Plant disease resistance genes: recent insights and potential applications. TRENDS in Biotechnology