Article thumbnail

Spatio-structural granularity of biological material entities

By Lars Vogt
Topics: Research Article
Publisher: BioMed Central
OAI identifier: oai:pubmedcentral.nih.gov:3098069
Provided by: PubMed Central

To submit an update or takedown request for this paper, please submit an Update/Correction/Removal Request.

Suggested articles

Citations

  1. (2007). A formal ontology of subcellular neuroanatomy. Frontiers in neuroinformatics
  2. A Formal Theory of Granularity - Toward enhancing biological and applied life sciences information system with granularity.
  3. (2005). A Strategy for Improving and Integrating Biomedical Ontologies. AMIA
  4. (2006). A taxonomy of types of granularity.
  5. A theory of granular partitions.
  6. (1991). A tradition of natural kinds.
  7. (2001). A unified theory of granularity, vagueness and approximation.
  8. (2005). A: Anatomical ontologies: names and places in biology. Genome biology
  9. (2008). Akkerhuis GA: Analysing hierarchy in the organization of biological and physical systems. Biological reviews of the Cambridge Philosophical Society
  10. Anatomical information science.
  11. (2003). Architectures of Biological Complexity. Integrative and Comparative Biology
  12. (2006). Aristotle's biology. Stanford Encyclopedia of Philosophy
  13. B: A taxonomy of granular partitions.
  14. Basic Formal Ontology for Bioinformatics.
  15. (2004). Bio-ontologies - fast and furious.
  16. (2006). Bio-ontologies: current trends and future directions. Briefings in Bioinformatics
  17. Biodynamic ontologies: Applying BFO in the biomedical domain.
  18. CL: Hierarchies in biology and paleontology. Paleobiology
  19. (2006). Data Standards: A Call to Action. OMICS:
  20. (2004). DD: Biomedical informatics and granularity. Comparative and functional genomics
  21. (1993). Development and evolution: complexity and change in biology.
  22. (1978). DJ: Levels of biological organization: an organism-centered approach. Bioscience
  23. (2006). Enhancing biological information systems with granularity.
  24. Evolution, population thinking, and essentialism.
  25. (1985). Evolving hierarchical systems: their structure and representation.
  26. (1988). Genetics, paleontology and macroevolution. Cambridge:
  27. (2003). Granular Spatio-Temporal Ontologies. AAAI Spring Symposium Papers
  28. (2006). Granularity, scale and collectivity: when size does and does not matter.
  29. (1990). Graphs - An Introductory Approach.
  30. Homeostasis, species, and higher taxa.
  31. Individuals, universals, collections: on the foundational relations of ontology.
  32. Integrating partonomic hierarchies in anatomy ontologies.
  33. (2007). Lewis S: The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration. Nature biotechnology
  34. (2003). Mejino JL Jr: A reference ontology for biomedical informatics: the Foundational Model of Anatomy.
  35. (1995). Multi-scale partitions: Application to spatial and statistical databases.
  36. Naming and necessity Cambridge,
  37. Natural kinds. In Ontological relativity and other essays Edited by: Quine WV.
  38. (2008). NF: Biomedical ontologies: a functional perspective. Briefings in Bioinformatics
  39. (1991). Northcutt RG: Biological hierarchies and the concept of homology.
  40. (2001). On the importance of standardisation in life sciences. Bioinformatics
  41. On the origin of phyla Chicago:
  42. (2009). Ontologies for neuroscience: what are they and what are they good for? Frontiers in neuroinformatics
  43. (2003). Ontologies: formalising biological knowledge for bioinformatics. BioEssays
  44. (1998). Operators, the Lego-bricks of nature, evolutionary transitions from fermions to neural networks. World Futures, The journal of general evolution
  45. Papakin I: Bodily systems and the spatial-functional structure of the human body.
  46. (2006). Parts and Theories in Compositional Biology. Biology and Philosophy
  47. Reductionism, levels of organization, and the mind-body problem. In Consciousness and the brain: A scientific and philosophical inquiry Edited by: Globus
  48. (2003). Representing Complexity in Part-Whole Relationships within the Foundational Model of Anatomy.
  49. (2004). Rhee SY: Ontologies in biology: design, applications and future challenges. nature reviews genetics
  50. (1984). Salthe SN: Hierarchy and evolution. Oxford Surveys in Evolutionary Biology
  51. Scale in object and process ontologies.
  52. Scientific Essentialism Cambridge:
  53. (2008). SNOMED CT style guide: body structures - anatomy -Version 1.06. Surveys in Geophysics
  54. (2009). Standford Encyclopedia of Philosophy
  55. Strukturen der Komplexität
  56. (2004). Symbolic modeling of structural relationships in the Foundational Model of Anatomy.
  57. Systema naturae 10th edition.
  58. The Foundational Model of Anatomy Ontology. In Anatomy Ontologies for Bioinformatics: Principles and Practice Edited by:
  59. (2009). The future role of bio-ontologies for developing a general data standard in biology: chance and challenge for zoo-morphology. Zoomorphology
  60. (1982). The growth of biological thought: diversity, evolution, and inheritance Cambridge,
  61. (1975). The meaning of 'meaning'. In Philosophical Papers 2: Mind, Language and Reality Edited by: Putnam H. Cambridge:
  62. The metaphysics, epistemology and methodology of levels.
  63. The ontology of complex systems: Levels of organization, perspecitves, and causal thickets.
  64. (1973). The organization of complex systems.
  65. (2004). The Role of Foundational Relations in the Alignment of Biomedical Ontologies. In Medinfo
  66. (1978). Topological properties of geographic surfaces: Applications in computer cartography.
  67. Toward cross-granular querying over modularized ontologies.
  68. (1985). Unfinished synthesis: biological hierarchies and modern evolutionary thought
  69. (2006). Using and improving bio-ontologies stored in relational databases. Extended abstract of the talk held at SBIOLBD