Article thumbnail

Tomato root transcriptome response to a nitrogen-enriched soil patch

By Daniel R Ruzicka, Felipe H Barrios-Masias, Natasha T Hausmann, Louise E Jackson and Daniel P Schachtman
Topics: Research Article
Publisher: BioMed Central
OAI identifier: oai:pubmedcentral.nih.gov:3095349
Provided by: PubMed Central

To submit an update or takedown request for this paper, please submit an Update/Correction/Removal Request.

Suggested articles

Citations

  1. (2001). A new mathematical model for relative quantification in realtime RT-PCR.
  2. (2007). A: Functional characterization of LePT4: A phosphate transporter in tomato with mycorrhiza-enhanced expression.
  3. (2004). Amtmann A: The potassium-dependant transcriptome of Arabidopsis reveals a prominent role of jasmonic acid in nutrient signaling. Plant Physiology
  4. (2006). Azevedo RA: Nitrogen use efficiency. 1. Uptake of nitrogen from the soil. Annals of Applied Biology
  5. (2007). Azevedo RA: Nitrogen use efficiency. 2. Amino acid metabolism.
  6. (2005). Baligar VC: Enhancing nitrogen use efficiency in crop plants.
  7. (2009). BN: Root based approaches to improving nitrogen use efficiency in plants. Plant, Cell and Environment
  8. (1989). CD: Proliferation of maize (Zea mays L) roots in response to localized supply of nitrate.
  9. (2008). Chromatin and Arabidopsis root development.
  10. (1995). Controlling the false discovery rate: a practical and powerful approach to multiple testing.
  11. (2005). Cramer MD: Root nitrogen acquisition and assimilation. Plant and Soil
  12. (2001). DA: A rapid, simple spectrophotometric method for simultaneous detection of nitrate and nitrite. Nitric Oxide -Biology and Chemistry
  13. (1994). de Kroon H: Foraging in plants: The role of morphological plasticity in resource acquisition.
  14. (2006). De Veylder L: Cell cycle regulation in plant development. Annual Review of Genetics
  15. (2006). Differential regulation of five Pht1 phosphate transporters from maize (Zea mays L.). Plant Biology
  16. (2005). E: Controls on nitrogen cycling in terrestrial ecosystems: A synthetic analysis of literature data. Ecological Monographs
  17. (1998). et al.: Analysis of 1.9
  18. (1999). Fitter AH: Why plants bother: Root proliferation results in increased nitrogen capture from an organic patch when two grasses compete. Plant Cell and Environment
  19. (1998). Forde BG: An Arabidopsis MADS box gene that controls nutrient-induced changes in root architecture. Science
  20. (2005). Forde BG: Nutritional regulation of ANR1 and other root-expressed MADS-box genes in Arabidopsis thaliana. Planta
  21. (2000). Frommer WB: Differential regulation of three functional ammonium transporter genes by nitrogen in root hairs and by light in leaves of tomato. The Plant Journal
  22. (2004). Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen. Plant Physiology
  23. (2008). Gutiérrez RA: A systems view of nitrogen nutrient and metabolite responses in Arabidopsis. Current Opinion in Plant Biology
  24. (1997). Hochmuth GJ: Handbook for Vegetable Growers
  25. (2007). How the environment regulates root architecture in dicots.
  26. (2007). Hsu PK: Nitrate transporters and peptide transporters. FEBS Letters
  27. (1990). JA: A new method which gives an objective measure of colonization of roots by vesiculararbuscular mycorrhizal fungi. New Phytologist
  28. (2002). JAH: Cell cycle-regulated gene expression in Arabidopsis.
  29. (2001). Kochian LV: Nitrate-induced genes in tomato roots. Array analysis reveals novel genes that may play a role in nitrogen nutrition. Plant Physiology
  30. (2003). Lambers H: Interaction of nitrogen and phosphorus nutrition in determining growth. Plant and Soil
  31. (1990). Lipman DJ: Basic local alignment search tool.
  32. (2005). LM: Implementing false discovery rate control: Increasing your power. Oikos
  33. (2008). Microarray analysis reveals early responsive genes possibly involved in localized nitrate stimulation of lateral root development in maize (Zea mays L.). Plant Science
  34. (2003). Microbial immobilization of ammonium and nitrate in relation to ammonification and nitrification rates in organic and conventional cropping systems. Soil Biology and Biochemistry
  35. (2005). Microbial responses and nitrous oxide emissions during wetting and drying of organically and conventionally managed soil under tomatoes. Biology and Fertility of Soils
  36. (2007). MJ: Phosphate in the arbuscular mycorrhizal symbiosis: transport properties and regulator roles. Plant Cell and Environment
  37. (2007). Molecular mechanisms of ammonium transport and accumulation in plants.
  38. (2009). Multilevel analysis of primary metabolism provides new insights into the role of potassium nutrition for glycolysis and nitrogen assimilation in Arabidopsis roots. Plant Physiology
  39. (2009). Mycorrhizal phosphate uptake pathway in tomato is phosphorus-repressible and transcriptionally regulated. New Phytologist
  40. (2009). Nitrate and glutamate as environmental cues for behavioural responses in plant roots. Plant, Cell and Environment
  41. (2009). Nitrate uptake by plant roots. Botany
  42. (2004). Nitrogen mineralization: Challenges of a changing paradigm. Ecology
  43. (2003). NM: Microarray analysis of the nitrate response in Arabidopsis roots and shoots reveals over 1000 rapidly responding genes and new linkages to glucose, trehalose-6-phosphate, iron, and sulfate metabolism. Plant Physiology
  44. (2007). Nutrient sensing and signaling: NPKS. Annual Review of Plant Biology
  45. (2006). Peng XX: Differential expression of rice genes under different nitrogen forms and their relationship with sulfur metabolism.
  46. (2005). Physiological and molecular evidence for Pi uptake via the symbiotic pathway in a reduced mycorrhizal colonization mutant in tomato associated with a compatible fungus. New Phytologist
  47. (2009). Prignet-Combaret C: Acquisition of phosphorus and nitrogen in the rhizosphere and plant growth promotion by microorganisms. Plant Soil
  48. (1997). Raghothama KG: Differential expression of TPS11, a phosphate staration-induced gene in tomato. Plant Molecular Biology
  49. (1998). Raghothama KG: Tomato phosphate transporter genes are differentially regulated in plant tissues by phosphorus. Plant Physiology
  50. (2000). Regulation of histone gene expression during the cell cycle. Plant Molecular Biology
  51. (2000). Roots foraging and the exploration of soil nutrient patches: the role of the mycorrhizal symbiosis. Functional Ecology
  52. (1999). Rychter AM: Low phosphate nutrition alters bean plants' ability to assimilate and translocate nitrate.
  53. (2001). Schmittgen TD: Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCT method. Methods
  54. (2006). Scow KM: Arbuscular mycorrhizas, microbial communities, nutrient availability, and soil aggregates in organic tomato production. Plant and Soil
  55. (1998). SE: A mutant in Lycopersicon esculentum Mill. with highly reduced VA mycorrhizal colonization: Isolation and preliminary characterisation.
  56. (2007). SJ: Global transcription profiling reveals differential responses to chronic nitrogen stress and putative nitrogen regulatory components in Arabidopsis.
  57. (1995). Soil nitrogen. In Methods in applied soil microbiology and biochemistry San Diego:
  58. (1992). Spontaneous reaction for acid dissolution of biological tissues in closed vessels. Analytical Chemistry
  59. (2005). The characterization of novel mycorrhiza-specific phosphate transporters from Lycopersicon esculentum and Solanum tuberosum uncovers functional redundancy in symbiotic phosphate transport in solanaceous species.
  60. (2004). The plastic plant: root responses to heterogeneous supplies of nutrients. New Phytologist
  61. (2002). The regulation of nitrate and ammonium transport systems in plants.
  62. (2000). Udvardi MK: Structure, function and regulation of ammonium transporters in plants. Biochimica Et Biophysica Acta
  63. (2005). va Aarle IM: The influence of external nitrogen on carbon allocation to Glomus intraradicies in monoexinc arbuscular mycorrhiza. New Phytologist
  64. (2006). von Wirén N: Additive contribution of AMT1;1 and AMT1;3 to high-affinity ammonium uptake across the plasma membrane of nitrogen-deficient Arabidopsis roots.
  65. (2004). von Wirén N: Regulatory levels for the transport of ammonium in plant roots.
  66. (1996). WB: Preferential expression of an ammonium transporter and of two putative nitrate transporters in root hairs of tomato. PNAS
  67. (2007). ZH: Regulation of cell wall biosynthesis. Current Opinion in Plant Biology
  68. (2006). Zhang Q: Expression profiles of 10,422 genes at early stage of low nitrogen stress in rice assayed using a cDNA microarray. Plant Molecular Biology