Article thumbnail

Structure and dynamics of the operon map of Buchnera aphidicola sp. strain APS

By Lilia Brinza, Federica Calevro, Gabrielle Duport, Karen Gaget, Christian Gautier and Hubert Charles
Topics: Research Article
Publisher: BioMed Central
OAI identifier: oai:pubmedcentral.nih.gov:3091783
Provided by: PubMed Central

To submit an update or takedown request for this paper, please submit an Update/Correction/Removal Request.

Suggested articles

Citations

  1. (Database of prOkaryotic OpeRons).
  2. (2003). A Bayesian network approach to operon prediction. Bioinformatics
  3. (2002). A powerful non-homology method for the prediction of operons in prokaryotes. Bioinformatics
  4. (2004). A: Bacterial endosymbionts of insects: insights from comparative genomics. Environmental microbiology
  5. (2001). A: Genome size reduction through multiple events of gene disintegration in Buchnera APS. Trends in Genetics
  6. (2001). A: The process of genome shrinkage in the obligate symbiont Buchnera aphidicola. Genome Biology
  7. (2003). A: Why are the genomes of endosymbiotic bacteria so stable? Trends in Genetics
  8. (1996). Accelerated evolution and Muller’s rachet in endosymbiotic bacteria.
  9. (2006). Alm EJ: The life-cycle of operons. PLoS Genetics
  10. (2002). Andersson SGE: 50 million years of genomic stasis in endosymbiotic bacteria. Science
  11. (2005). AP: A novel method for accurate operon predictions in all sequenced prokaryotes. Nucleic Acids Research
  12. (1991). BC: Evidence for the establishment of aphid-eubacterium endosymbiosis in an ancestor of four aphid families.
  13. (2010). Cossart P: Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity. Nat Rev Genet
  14. (2004). Cozzarelli NR: Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli. Genome Biol
  15. (2000). et al: Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen. Nature
  16. (2008). et al: RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation. Nucleic Acids Research
  17. (2004). Fayard JM: Assessment of 35 mer amino-modified oligonucleotide based microarray with bacterial samples.
  18. (1999). Gene size reduction in the bacterial aphid endosymbiont, Buchnera. Molecular Biology and Evolution
  19. (2002). Genome evolution in bacterial endosymbionts of insects.
  20. (2006). GH: BuchneraBASE: a postgenomic resource for Buchnera sp.
  21. (1985). Good RF: A bidirectional rho-independent transcription terminator between the E. coli tonB gene and an opposing gene. Cell
  22. (1993). H: A molecular clock in endosymbiotic bacteria is calibrated using the insect hosts.
  23. (2006). H: Different levels of transcriptional regulation due to trophic constraints in the reduced genome of Buchnera aphidicola APS. Applied Environmental Microbiology
  24. (2000). H: Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp.
  25. (2007). Hu WS: Transcriptome dynamics-based operon prediction and verification in Streptomyces coelicolor.
  26. (2002). Koonin EV: Congruent evolution of different classes of non-coding DNA in prokaryotic genomes.
  27. (2004). Molecular Genetics of Bacteria. 4 edition.
  28. (2007). Operon prediction using both genome-specific and general genomic information.
  29. (2000). Operons in Escherichia coli: genomic analyses and predictions.
  30. (1999). Physical and genetical map of the genome of Buchnera, the primary endosymbiont of the pea aphid Acyrthosiphon pisum.
  31. (2007). Salzberg SL: Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake. Genome Biology
  32. (1996). Sequencing and analysis of bacterial genomes. Current Biology
  33. (2009). T: Impact of host hevelopmental age on the transcriptome of the symbiotic bacterium Buchnera aphidicola in the pea aphid (Acyrthosiphon pisum). Applied and Environmental Microbiology
  34. (1999). Thao ML: Detection of messenger RNA transcribed from genes encoding enzymes of amino acid biosynthesis in Buchnera aphidicola (Endosymbiont of aphids). Current Microbiology
  35. (2009). The dynamics and time scale of ongoing genomic erosion in symbiotic bacteria. Science
  36. (2004). Using functional and organizational information to improve genome-wide computational prediction of transcription units on pathway-genome databases. Bioinformatics
  37. (1995). von Hippel PH: Transcription termination at intrinsic terminators: the role of the RNA hairpin.
  38. (2005). Wernisch L: A universally applicable method of operon map prediction on minimally annotated genomes using conserved genomic context. Nucleic Acids Research