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Genome analysis and comparative genomics of a Giardia intestinalis assemblage E isolate

By Jon Jerlström-Hultqvist, Oscar Franzén, Johan Ankarklev, Feifei Xu, Eva Nohýnková, Jan O Andersson, Staffan G Svärd and Björn Andersson
Topics: Research Article
Publisher: BioMed Central
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Provided by: PubMed Central

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  1. (2005). ACT: the Artemis Comparison Tool. Bioinformatics
  2. (2003). AJ: Phylogenetic analyses of diplomonad genes reveal frequent lateral gene transfers affecting eukaryotes. Curr Biol
  3. (1998). Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res
  4. (2001). Biology of Giardia lamblia. Clin Microbiol Rev
  5. (2009). Caccio SM, Thompson RCA: Variation in Giardia: towards a taxonomic revision of the genus. Trends Parasitol
  6. (2005). Cacciò SM: Genetic heterogeneity at the beta-giardin locus among human and animal isolates of Giardiaduodenalis and identification of potentially zoonotic subgenotypes.
  7. (2009). Circos: an information aesthetic for comparative genomics. Genome Res
  8. (1992). Clin Microbiol Rev
  9. (2007). CR: Population genetics provides evidence for recombination in Giardia. Curr Biol
  10. (2007). Cytogenetic evidence for diversity of two nuclei within a single diplomonad cell of Giardia. Chromosoma
  11. (1997). Eddy SR: tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res
  12. (2001). Ehrlich SD: Replication slippage involves DNA polymerase pausing and dissociation.
  13. (2005). et al: The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease. Science
  14. (2000). Fairley CK: Prevalence of enteric pathogens among community based asymptomatic individuals.
  15. (2002). FR: Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli.
  16. (2009). Gene transfer and diversification of microbial eukaryotes. Annu Rev Microbiol
  17. (1991). Giardia infection in pigs: detection and in vitro isolation of trophozoites of the Giardia intestinalis group. Parasitology
  18. (2002). Giardia: highly evolved parasite or early branching eukaryote?
  19. (2009). GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis. Nucleic Acids Res
  20. (2005). H: RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees. Bioinformatics
  21. (2001). HG: Three retrotransposon families in the genome of Giardia lamblia: two telomeric, one dead.
  22. (1992). LH: Spontaneous chromosome rearrangements in the protozoan Giardia lamblia: estimation of mutation rates.
  23. (2003). Lucocq JM: Mitochondrial remnant organelles of Giardia function in iron-sulphur protein maturation. Nature
  24. (1997). Mayrhofer G: Genetic analysis of Giardia from hoofed farm animals reveals artiodactyl-specific and potentially zoonotic genotypes.
  25. (1989). Meloni BP: Giardia intestinalis: electrophoretic evidence for a species complex.
  26. (2006). MEME: discovering and analyzing DNA and protein sequence motifs. Nucleic Acids Res
  27. (2005). MF: Outbreaks associated with recreational water in the United States.
  28. MIRA sequence assembler [ mediawiki/mira-assembler/].
  29. (2004). Monis PT: Variation in Giardia: implications for taxonomy and epidemiology. Adv Parasitol
  30. (1999). Olsen GJ: CRITICA: coding region identification tool invoking comparative analysis. Mol Biol Evol
  31. (2009). on behalf of the ZOOPNET network and partners: Identification of Zoonotic Genotypes of Giardia duodenalis. PLoS Negl Trop Dis
  32. (2008). Ortega-Pierres G: Identification of nucleoli in the early branching protist Giardia duodenalis.
  33. (1997). PAML: a program package for phylogenetic analysis by maximum likelihood.
  34. (1998). RD: Structural basis of karyotype heterogeneity in Giardia lamblia. Mol Biochem Parasitol
  35. (1991). RG: Occurrence of Giardia and Cryptosporidium spp. in surface water supplies. Appl Environ Microbiol
  36. (1999). Salzberg SL: Improved microbial gene identification with GLIMMER. Nucleic Acids Res
  37. (1994). SM: Chromosome rearrangements in Giardia lamblia. Parasitol Today (Regul Ed)
  38. (2007). Sogin ML: Genomic Minimalism in the Early Diverging Intestinal Parasite Giardia lamblia. Science
  39. (2004). Strimmer K: APE: Analyses of Phylogenetics and Evolution in R language. Bioinformatics
  40. (2009). Svärd SG: Draft genome sequencing of giardia intestinalis assemblage B isolate GS: is human giardiasis caused by two different species? PLoS Pathog
  41. (2010). Svärd SG: From mouse to moose: Multilocus genotyping of Giardia isolates from various animal species. Vet Parasitol
  42. (2001). Svärd SG: Genome ploidy in different stages of the Giardia lamblia life cycle. Cell Microbiol
  43. (2010). Tablet– next generation sequence assembly visualization. Bioinformatics
  44. (2005). transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences.
  45. (2002). Tuladhar NR: Poor Intestinal Permeability in Mildly Stunted Nepali Children: Associations with Weaning Practices and Giardia Lamblia Infection.
  46. (1993). Upcroft P: Chromosomal duplication in Giardia duodenalis.
  47. (2000). W: A greedy algorithm for aligning DNA sequences.