Article thumbnail

High-throughput SNP discovery and assay development in common bean

By David L Hyten, Qijian Song, Edward W Fickus, Charles V Quigley, Jong-Sung Lim, Ik-Young Choi, Eun-Young Hwang, Marcial Pastor-Corrales and Perry B Cregan
Topics: Methodology Article
Publisher: BioMed Central
OAI identifier: oai:pubmedcentral.nih.gov:3091671
Provided by: PubMed Central

To submit an update or takedown request for this paper, please submit an Update/Correction/Removal Request.

Suggested articles

Citations

  1. (2007). A soybean transcript map: gene distribution, haplotype and single-nucleotide polymorphism analysis. Genetics
  2. (2009). al: Development and implementation of high-throughput SNP genotyping in barley.
  3. (2003). al: Highly parallel SNP genotyping. Cold Spring Harb Symp Quant Biol
  4. (2008). Cregan PB: High-throughput genotyping with the GoldenGate assay in the complex genome of soybean. Theor appl genet
  5. (2003). Cregan PB: Single-nucleotide polymorphisms in soybean. Genetics
  6. (2010). Dos Santos KG, et al: Cytogenetic map of common bean (Phaseolus vulgaris L.). Chromosome Res
  7. (2010). et al: Genome sequence of the palaeopolyploid soybean. Nature
  8. (2005). et al: Genome sequencing in microfabricated high-density picolitre reactors. Nature
  9. (2005). et al: Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Mol Genet Genomics
  10. (2010). et al: Repeat subtraction-mediated sequence capture from a complex genome.
  11. GD, Cregan PB: High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence.
  12. (2008). High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome.
  13. (2004). HR: Comparison of four flow cytometric SNP detection assays and their use in plant improvement. Theor appl genet
  14. (2009). JA: SNP discovery via genomic reduction, barcoding, and 454-pyroseqeuncing in Amaranth. The Plant Genome
  15. (2006). KL: Highly parallel genomic assays. Nat Rev Genet
  16. (1995). Leitch IJ: Nuclear DNA amounts in angiosperms. Ann bot
  17. (1999). Mining SNPs from EST databases. Genome Res
  18. (2010). PB: A high density integrated genetic linkage map of soybean and the development of a 1,536 Universal Soy Linkage Panel for QTL mapping. Crop Sci
  19. (1988). RC: A rapid protocol for isolating soybean DNA. Soybean Genet Newsl
  20. (2007). Schnable PS: SNP discovery via 454 transcriptome sequencing. Plant J
  21. (1997). Sequence mapping by electronic PCR. Genome Res
  22. (2005). Sequencing and Analysis of Common Bean ESTs. Building a Foundation for Functional Genomics. Plant Physiol
  23. (2008). Single Nucleotide Polymorphisms in Common Bean: Their Discovery and Genotyping Using a Multiplex Detection System. The Plant Genome
  24. (2000). Skaletsky H: Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol
  25. (2008). Sonstegard TS: SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries. Nat Methods
  26. (2007). SS: SNP discovery via 454 transcriptome sequencing. The Plant Journal
  27. (1999). WR: A general approach to single-nucleotide polymorphism discovery. Nat Genet