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Complete genome sequence of Weeksella virosa type strain (9751T)

By Elke Lang, Hazuki Teshima, Susan Lucas, Alla Lapidus, Nancy Hammon, Shweta Deshpande, Matt Nolan, Jan-Fang Cheng, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Mikhailova, Natalia Ivanova, Konstantinos Mavromatis, Amrita Pati, Roxane Tapia, Cliff Han, Lynne Goodwin, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun-Juan Chang, Cynthia D. Jeffries, Evelyne-Marie Brambilla, Markus Kopitz, Manfred Rohde, Markus Göker, Brian J. Tindall, John C. Detter, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Hans-Peter Klenk and Nikos C. Kyrpides


Weeksella virosa Holmes et al. 1987 is the sole member and type species of the genus Weeksella which belongs to the family Flavobacteriaceae of the phylum Bacteroidetes. Twenty-nine isolates, collected from clinical specimens provided the basis for the taxon description. While the species seems to be a saprophyte of the mucous membranes of healthy man and warm-blooded animals a causal relationship with disease has been reported in a few instances. Except for the ability to produce indole and to hydrolyze Tween and proteins such as casein and gelatin, this aerobic, non-motile, non-pigmented bacterial species is metabolically inert in most traditional biochemical tests. The 2,272,954 bp long genome with its 2,105 protein-coding and 76 RNA genes consists of one circular chromosome and is a part of the Genomic Encyclopedia of Bacteria and Archaea project

Topics: Short Genome Reports
Publisher: Michigan State University
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Provided by: PubMed Central

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  1. (1998). A case of spontaneous peritonitis caused by Weeksella virosa.
  2. (2009). A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. Nature
  3. (2008). A rapid bootstrap algorithm for the RAxML Web servers. Syst Biol
  4. (2007). Aerococcus suis sp. nov., isolated from clinical specimens from swine.
  5. (1980). An algorithm for suffix stripping. Program: electronic library and information systems
  6. (2006). An introduction to the family Flavobacteriaceae. In: The Prokaryotes,
  7. (2010). BrowserTool takes expertise out of the database and puts it right in the browser. Microbiol Today
  8. (2003). Chryseobacterium joostei sp. nov., isolated from the dairy environment.
  9. Classification of bacteria and archaea in risk groups.
  10. (2011). Complete genome sequence of Riemerella anatipestifer type strain (Bruner T). Stand Genomic Sci
  11. (2006). Culturable phylogenetic diversity of the phylum 'Bacteroidetes' from river epilithon and coastal water and description of novel members of the family Flavobacteriaceae:
  12. (1978). Cutting a Gordian knot: emended classification and description of the genus Flavobacterium, emended description of the family Flavobacteriaceae, and proposal of Flavobacterium hydatis nom. nov. (Basonym, Cytophaga aquatilis Strohl and Tait
  13. (2006). Description of Wautersiella falsenii gen. nov., sp. nov., to accommodate clinical isolates phenotypically resembling members of the genera Chryseobacterium and Empe-Lang et al. 89 dobacter.
  14. (2008). Draft taxonomic outline of the Bacteroidetes,
  15. (2010). En route to a genome-based classification of Archaea and Bacteria? Syst Appl Microbiol
  16. (2006). Finishing repeat regions automatically with Dupfinisher.
  17. (2000). Gene Ontology: tool for the unification of biology.
  18. (2010). GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes. Nat Methods
  19. (2009). How many bootstrap replicates are necessary? Lect Notes Comput Sci
  20. (2009). IMG ER: a system for microbial genome annotation expert review and curation. Bioinformatics
  21. (1988). Incidence of vaginal Weeksella virosa (formerly group IIf).
  22. List of growth media used at DSMZ: hp.
  23. (2008). Lymphoepithelioma-like carcinoma of the urinary bladder in a cow associated with bovine papillomavirus type-2.
  24. (1990). Microbiological characteristics of Weeksella virosa (formerly CDC group IIf) isolated from the human genitourinary tract.
  25. (2002). Multiple sequence alignment using partial order graphs. Bioinformatics
  26. (1994). New perspectives in the classification of the flavobacteria: description of
  27. (2001). Oral colonization of aerobic and facultatively anaerobic gram-negative rods and cocci in irradiated, dentate, xerostomic individuals. Oral Microbiol Immunol
  28. (1989). Order 1. Cytophagales Leadbetter 1974, 99AL. In:
  29. (1995). Phenotypic characteristics, fatty acid composition, and isoprenoid quinone content of CDC group IIg bacteria.
  30. (2008). POLISHER: An effective tool for using ultra short reads in microbial genome assembly and finishing. AGBT,
  31. (2001). Polyamine distribution profiles in the eighteen genera phylogenetically located within the Flavobacterium-FlexibacterCytophaga complex. Microbios
  32. (2010). Prodigal: prokaryotic gene recognition and translation initiation site identification.
  33. (2002). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family.
  34. (2002). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae, and emended description of the family.
  35. (1991). Response of Weeksella virosa peritonitis to imipenem/cilastin. Adv Perit Dial
  36. (2000). Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.
  37. (2008). Study on the bacterial midgut microbiota associated to different Brazilian populations of Lutzomyia longipalpis (Lutz & Neiva) (Diptera: Psychodidae). Neotrop Entomol
  38. The DNA Bank Network: the start from a German initiative. Biopreservation and Biobanking (In press).
  39. (2006). The genera Bergeyella and Weeksella. In: The Prokaryotes,
  40. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res 2010; 38:D346-D354.
  41. (1998). The incidence of Weeksella- and Bergeyella-like bacteria in the food environment.
  42. (2008). The minimum information about a genome sequence (MIGS) specification. Nat Biotechnol
  43. (2001). The Road Map to the Manual. In: Garrity GM,
  44. (1989). The taxonomic relationship of certain environmental flavobacteria to the genus Weeksella.
  45. (1990). Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya.
  46. (1992). Validation of the publication of new names and new combinations previously effectively published outside the IJSB.
  47. (2008). Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res
  48. (1986). Weeksella virosa gen. nov., sp. nov. (formerly group IIf) found in human clinical specimens. Syst Appl Microbiol