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RNA Accessibility in cubic time

By Stephan H Bernhart, Ullrike Mückstein and Ivo L Hofacker
Topics: Research
Publisher: BioMed Central
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Provided by: PubMed Central

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  1. (2003). A statistical sampling algorithm for RNA secondary structure prediction. Nucleic Acids Res
  2. (1992). Björk G: Importance of mRNA folding and start codon accessibility in the expression of genes in a ribosomal protein operon of Escherichia coli.
  3. (2001). CE: Statistical prediction of single-stranded regions in RNA secondary structure and application to predicting effective antisense target sites and beyond. Nucleic Acids Res
  4. (2010). DH: NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure.
  5. (1994). Fast Folding and Comparison of RNA Secondary Structures. Monatsh Chemie
  6. (2008). Hofacker I: The impact of target site accessibility on the design of effective siRNAs. Nat Biotechnol
  7. (2006). Hofacker I: Thermodynamics of RNA-RNA binding. Bioinformatics
  8. (2011). Hofacker IL: Fast AccessibilityBased Prediction of RNA-RNA Interactions. Bioinformatics
  9. Hofacker IL: Translational Control by RNA-RNA Interaction: Improved Computation of RNA-RNA Binding Thermodynamics.
  10. (2008). IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions. Bioinformatics
  11. (2008). S: Variations on RNA folding and alignment: lessons from Benasque.
  12. (2007). Segal E: The role of site accessibility in microRNA target recognition. Nat Genet
  13. (2004). Structural basis for discriminative regulation of gene expression by adenine- and guaninesensing mRNAs. Chem Biol
  14. (2005). The effect of RNA secondary structures on RNA-ligand binding and the modifier RNA mechanism: a quantitative model. Gene
  15. (1990). The Equilibrium Partition Function and Base Pair Binding Probabilities for RNA Secondary Structure. Biopolymers