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Ancient DNA from lake sediments: Bridging the gap between paleoecology and genetics

By Lynn L Anderson-Carpenter, Jason S McLachlan, Stephen T Jackson, Melanie Kuch, Candice Y Lumibao and Hendrik N Poinar
Topics: Research Article
Publisher: BioMed Central
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Provided by: PubMed Central

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  1. (2010). A multidisciplinary study of archaeological grape seeds. Naturwissenschaften
  2. (1967). A spare-rod piston sample for lake sediments.
  3. (2005). A: Ancient DNA.
  4. (2003). A: Diverse plant and animal DNA from Holocene and Pleistocene sedimentary records. Science
  5. (2002). A: Dynamics of Pleistocene population extinctions in Beringian brown bears. Science
  6. (2005). A: Morphological and genetic studies of waterlogged Prunus species from the Roman viscus Tagetium, Switzerland.
  7. (2000). A: Population genetics of ice age brown bears.
  8. (2004). A: Rise and fall of the Beringian steppe bison. Science
  9. (2003). Application of organic geochemistry to paleolimnological reconstructions: a summary of examples from the Laurentian Great Lakes. Organic Geochemistry
  10. (2004). CJ: Genetic response to climate change: insights from ancient DNA and phylochronology. PLoS Biology
  11. (1980). Coring of soft lake sediments. Boreas
  12. (2006). De Beaulieu JL: A new scenario for the Quaternary history of European beech populations: paleobotanical evidence and genetic consequences. New Phytologist
  13. (2006). DNA from pollen: principles and potential. The Holocene
  14. (1997). Ducousso A: Chloroplast DNA footprints of postglacial recolonization by oaks.
  15. (2006). Eddy RG: Role of multidecadal climate variability in a range extension of pinyon pine. Ecology
  16. (1984). Fire and other factors controlling Big Woods vegetation of Minnesota in the Mid-Nineteenth Century. Ecological Monographs
  17. (2006). Forest genetics in space and time.
  18. (2004). Genetic analyses from ancient DNA. Annual Review of Genetics
  19. (1987). GM: Geographical variation of lodgepole pine in relation to population history.
  20. (2009). Hadly EA: Using phylochronology to reveal cryptic population histories: review and synthesis of 29 ancient DNA studies. Molecular Ecology
  21. (2009). Hobbs RJ: Ecological restoration in the light of ecological history. Science
  22. (2006). Holocene vegetation development of hemlock-hardwood forests in the Upper Peninsula of
  23. (2005). KD: Ancient DNA from pollen: a genetic record of population history in Scots pine. Molecular Ecology
  24. (2007). Kutzbach JE: Projected distributions of novel and disappearing climates by 2100
  25. (1998). L: A diatom-inferred water depth reconstruction for an Upper Peninsula, Michigan lake.
  26. (2004). Late Quaternary biogeography: linking biotic responses to environmental variability across time scales. In Frontiers of Biogeography. Edited by: Lomolino
  27. Macrofossil and pollen representation of coniferous trees in modern sediments from Washington.
  28. (1989). MB: Paleoecology of range limits: beech in the upper peninsula of Michigan. Ecology
  29. (2003). Mid-Holocene climate and the hemlock decline: the range limit of Tsuga canadensis in the western Great Lakes region, USA. The Holocene
  30. (1994). ML: Columbines: a geographically widespread species flock.
  31. (2007). MW: A framework for assisted migration in an era of climate change. Conservation Biology
  32. (2001). Pääbo S: Ancient DNA. Nature Reviews Genetics
  33. (2001). Pääbo S: DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA.
  34. (2004). Paleoecology and high-resolution paleohydrology of a kettle peatland in upper Michigan. Quaternary Research
  35. (2008). Parducci L: Analysis of short DNA fragments from Holocene peatmoss samples. The Holocene
  36. (2004). PL: Late-Quaternary vegetation dynamics in North America: scaling from taxa to biomes. Ecological Monographs
  37. (2009). Poinar HN: A quantitative approach to detect and overcome PCR inhibition in ancient DNA extracts. Biotechniques
  38. (2000). Poinar HN: Ancient DNA: Do it right or not at all. Science
  39. (2008). Poinar HN: Out of America: Ancient DNA evidence for a New World origin of Late Quaternary woolly mammoths. Current Biology
  40. (1999). Pollen dispersal models in Quaternary plant ecology: assumptions, parameters, and prescriptions. Botanical Review
  41. (2008). Pollution of lakes and rivers: a paleoenvironmental perspective Oxford: Blackwell Publishing;
  42. (2005). PS: Molecular indicators of tree migration capacity under rapid climate change. Ecology
  43. (2008). Rannala BH: Bayesian inference of errors in ancient DNA caused by postmortem degradation. Molecular Biology and Evolution
  44. (2002). Reille M: The spread of deciduous Quercus throughout Europe since the last glacial period. Forest Ecology and Management
  45. (2001). RG: Range shifts and adaptive responses to Quaternary climate change. Science
  46. (2005). RJ: Ancient plant DNA: review and prospects. New Phytologist
  47. (1996). RJ: Chloroplast phylogeography of the common beech (Faguls Sylvatica L), in Europe. Evolution
  48. (2009). RJ: Paleoecology meets genetics: deciphering past vegetational dynamics.
  49. (2002). RK: The role of late Holocene climate variability in the expansion of yellow birch in the western Great Lakes region. Diversity and Distributions
  50. (2007). RK: Validation of pollen studies.
  51. (2006). S: Ancient olive DNA in pits: preservation, amplification and sequence analysis.
  52. (2006). Schuster SC: Metagenomics to paleogenomics: large-scale sequencing of mammoth DNA.
  53. (1992). Sing CF: A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics
  54. (1991). T: Potential magnitude of future vegetation change in Eastern North America: comparisons with the past. Science
  55. (2000). TCS: a computer program to estimate gene genealogies. Molecular Ecology
  56. (1958). The core-freezer–A new sampler for lake sediments. Ecology
  57. (2000). The genetic legacy of the Quaternary ice ages. Nature
  58. (1988). TI: Rates of sediment accumulation in pollen cores from small lakes and mires of eastern North America. Quaternary Research
  59. (2004). Validating the use of woodrat (Neotoma) middens for documenting natural invasions.
  60. (2007). Willerslev E: Ancient DNA chronology within sediment deposits: Are paleobiological reconstructions possible and is DNA leaching a factor? Molecular Biology and Evolution
  61. (2009). Willerslev E: Ancient DNA reveals late survival of mammoth and horse in interior Alaska.