Article thumbnail

CODA: Accurate Detection of Functional Associations between Proteins in Eukaryotic Genomes Using Domain Fusion

By Adam J. Reid, Juan A. G. Ranea, Andrew B. Clegg and Christine A. Orengo
Topics: Research Article
Publisher: Public Library of Science
OAI identifier: oai:pubmedcentral.nih.gov:2879367
Provided by: PubMed Central

To submit an update or takedown request for this paper, please submit an Update/Correction/Removal Request.

Suggested articles

Citations

  1. (2001). An insight into domain combinations.
  2. (1999). Detecting protein function and protein-protein interactions from genome sequences.
  3. (2003). Domain fusion analysis by applying relational algebra to protein sequence and domain databases.
  4. (2001). Functional associations of proteins in entire genomes by means of exhaustive detection of gene fusions.
  5. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
  6. (2008). Gene3D: comprehensive structural and functional annotation of genomes.
  7. (2001). Genes linked by fusion events are generally of the same functional category: a systematic analysis of 30 microbial genomes.
  8. (2000). Genome evolution. Gene fusion versus gene fission.
  9. (1981). Identification of common molecular subsequences.
  10. (2003). Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation.
  11. (1983). Kinetics of homophilic binding by embryonic and adult forms of the neural cell adhesion molecule.
  12. (2004). Malafosse A
  13. (1992). Mutations in the DNA ligase I gene of an individual with immunodeficiencies and cellular hypersensitivity to DNA-damaging agents.
  14. (2006). Pfam: clans, web tools and services.
  15. (2002). Predicting functional linkages from gene fusions with confidence.
  16. (2000). Predicting protein function by genomic context: quantitative evaluation and qualitative inferences.
  17. (2004). Prolinks: a database of protein functional linkages derived from coevolution.
  18. (1999). Protein interaction maps for complete genomes based on gene fusion events.
  19. (2005). Relative rates of gene fusion and fission in multi-domain proteins.
  20. (1999). Semantic similarity in a taxonomy: An information-based measure and its application to problems of ambiguity in natural language.
  21. (2007). STRING 7–recent developments in the integration and prediction of protein interactions.
  22. (2008). The Pfam protein families database.