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flowClust: a Bioconductor package for automated gating of flow cytometry data

By Kenneth Lo, Florian Hahne, Ryan R Brinkman and Raphael Gottardo
Topics: Software
Publisher: BioMed Central
OAI identifier: oai:pubmedcentral.nih.gov:2701419
Provided by: PubMed Central

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Citations

  1. (2006). AE: MCLUST Version 3 for R: Normal Mixture Modeling and Model-Based Clustering. In
  2. (2001). An update on the use of flow cytometry in HIV infection and AIDS. Clin Lab Med
  3. (2008). Automated gating of flow cytometry data via robust model-based clustering. Cytometry A
  4. (2003). Beyond six colors: a new era in flow cytometry. Nat Med
  5. (2004). Bioconductor: Open software development for computational biology and bioinformatics. Genome Biol
  6. (2004). Current applications of flow cytometry in the diagnosis of primary immunodeficiency diseases. Arch Pathol Lab Med
  7. (2004). Cytometry A
  8. (2004). Darzynkiewicz Z: Analysis of cell cycle by flow cytometry. Methods Mol Biol
  9. (1997). Data processing and analysis: Data management.
  10. (2006). Data standards for flow cytometry. OMICS
  11. (1977). DB: Maximum likelihood from incomplete data via the EM algorithm.
  12. (2004). DNA histogram analysis for node-negative breast cancer. Cytometry A
  13. (1981). Doksum KA: An analysis of transformations revisited.
  14. (2004). DR: Critical role of flow cytometry in evaluating peripheral blood hematopoietic stem cell grafts. Cytometry A
  15. (1978). Estimating the Dimension of a Model. Ann Statist
  16. (2000). Finite Mixture Models Wiley
  17. (2002). Flow cytometric analysis of cytokines 6th edition.
  18. (2000). Flow cytometric measurement of intracellular cytokines.
  19. (2007). Flow cytometry analyses and bioinformatics: Interest in new softwares to optimize novel technologies and to favor the emergence of innovative concepts in cell research. Cytometry A
  20. (2000). Flow cytometry of apoptotic cell death.
  21. (2000). Halstensen A: Phagocytosis: measurement by flow cytometry.
  22. (2001). Herzenberg LA: Probability binning comparison: a metric for quantitating multivariate distribution differences. Cytometry
  23. (2001). Herzenberg LA: Probability binning comparison: a metric for quantitating univariate distribution differences. Cytometry
  24. (2003). Holland-Staley CA: Genomics, transcriptomics, proteomics, and numbers. Arch Pathol Lab Med
  25. (2004). Immunophenotyping of acute leukemias and myelodysplastic syndromes. Cytometry A
  26. (2004). Impact of flow cytometry on the diagnosis and characterization of lymphomas, chronic lymphoproliferative disorders and plasma cell neoplasias. Cytometry A
  27. (2004). Isacke CM: A new spreadsheet method for the analysis of bivariate flow cytometric data.
  28. (2003). Maecker HT: Performance of platebased cytokine flow cytometry with automated data analysis.
  29. (1985). Makov UE: Statistical Analysis of Finite Mixture Distributions
  30. (2000). McLachlan GJ: Robust mixture modelling using the t distribution. Stat Comput
  31. (1988). Mixture Models: Inference and Applications to Clustering
  32. (2004). OD: Analysis of protein phosphorylation and cellular signaling events by flow cytometry: techniques and clinical applications. Clin Immunol
  33. (2004). Programming with Data: A Guide to the S Language
  34. (2008). R: flowCore: A Bioconductor software package for high throughput flow cytometry data analysis.
  35. (1998). Raftery AE: How many clusters? Which clustering method? Answers via model-based cluster analysis.
  36. (2002). Raftery AE: Model-based clustering, discriminant analysis, and density estimation.
  37. (1993). Raftery AE: Model-based Gaussian and Non-Gaussian Clustering. Biometrics
  38. (2004). Twenty-five years of clinical flow cytometry: AIDS accelerated global instrument distribution. Cytometry A
  39. (2008). Using flowViz to visualize flow cytometry data. Bioinformatics

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