Skip to main content
Article thumbnail
Location of Repository

Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data

By Navdeep Jaitly, Anoop Mayampurath, Kyle Littlefield, Joshua N Adkins, Gordon A Anderson and Richard D Smith
Topics: Software
Publisher: BioMed Central
OAI identifier: oai:pubmedcentral.nih.gov:2666663
Provided by: PubMed Central
Download PDF:
Sorry, we are unable to provide the full text but you may find it at the following location(s):
  • http://www.pubmedcentral.nih.g... (external link)
  • Suggested articles

    Citations

    1. (1996). A high-performance modular data system for Fourier transform ion cyclotron resonance mass spectrometry. Rapid Commun Mass Spectrom
    2. (2006). A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS. Bioinformatics
    3. (2004). A Tool To Visualize and Evaluate Data Obtained by Liquid Chromatography-Electrospray Ionization-Mass Spectrometry. Anal Chem
    4. (2007). Accurate Mass Measurements in Proteomics. Chemical Reviews
    5. (1998). AG: A universal algorithm for fast and automated charge state deconvolution of electrospray mass-tocharge ratio spectra.
    6. (2002). An accurate mass tag strategy for quantitative and high-throughput proteome measurements. Proteomics
    7. (2006). Angeletti RH: Automatic deconvolution of isotoperesolved mass spectra using variable selection and quantized peptide mass distribution. Analytical Chemistry
    8. (1995). FW: Automated assignment of charge states from resolved isotopic peaks for multiplycharged ions.
    9. (2000). FW: Automated reduction and interpretation of high resolution electrospray mass spectra of large molecules.
    10. (1995). FW: Determination of monoisotopic masses and ion populations for large biomolecules from resolved isotopic distributions.
    11. (1989). Interpreting mass spectra of multiply charged ions. Anal Chem
    12. (2007). MacCoss MJ: High-Speed Data Reduction, Feature Detection, and MS/MS Spectrum Quality Assessment of Shotgun Proteomics Data Sets Using HighResolution Mass Spectrometry. Anal Chem
    13. (2006). MapQuant: open-source software for largescale protein quantification. Proteomics
    14. (2006). O'Connor P: Algorithms for Automatic Interpretation of High Resolution Mass Spectra.
    15. (2008). OpenMS-An open-source software framework for mass spectrometry. Bmc Bioinformatics
    16. (2006). PEPPeR: A platform for experimental proteomic pattern recognition. Mol Cell Proteomics
    17. (1995). RD: Rapid Calculation of Isotope Distributions. Anal Chem
    18. (1992). Reinhold VN: Electrospray Ionozation Mass Spectrometry: Deconvolution by an Entroby-Based Algorithm.
    19. (2007). VIPER: an advanced software package to support high-throughput LC-MS peptide identification. Bioinformatics
    20. (2006). XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification. Anal Chem

    To submit an update or takedown request for this paper, please submit an Update/Correction/Removal Request.