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A blackberry (Rubus L.) expressed sequence tag library for the development of simple sequence repeat markers

By Kim S Lewers, Chris A Saski, Brandon J Cuthbertson, David C Henry, Meg E Staton, Dorrie S Main, Anik L Dhanaraj, Lisa J Rowland and Jeff P Tomkins
Topics: Research Article
Publisher: BioMed Central
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Provided by: PubMed Central

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  2. (1998). A graphical tool for sequence finishing. Genome Research
  3. (2002). A physical map of a gene-dense region in soybean Linkage Group A2 near the black seed coat and Rhg4 loci. Theor Appl Genet
  4. (1999). A: A DNA sequence assembly program. Genome Research
  5. (2005). AG: Candidate gene database and transcript map for peach, a model species for fruit trees. Theor Appl Genet
  6. (2000). Analysis of grape ESTs: global gene expression patterns in leaf and berry. Plant Sci
  7. (1993). Arapaho' erect thornless blackberry. HortScience
  8. (1998). Basecalling of automated sequence traces using phred. I. Accuracy assessment. Genome Research
  9. (2001). Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential. Genome Res
  10. (2001). Construction of a genetic linkage map in tetraploid species using molecular markers. Genetics
  11. (2007). D: GDR (Genome Database for Rosaceae): integrated webdatabase for Rosaceae genomics and genetics data. Nucleic Acids Res
  12. (2004). dePamphilis CW: EST clustering error evaluation and correction. Bioinformatics
  13. (2005). dePamphilis CW: Gene capture prediction and overlap estimation in EST sequencing from one or multiple libraries. Bioinformatics
  14. (2004). E: Swiss-Prot: Juggling between evolution and stability. Brief Bioinform
  15. Encyclopedia of Metabolic Pathways []
  16. (2005). Expressed sequence tags (ESTs) and simple sequence repeat (SSR) markers from octoploid strawberry (Fragaria × ananassa).
  17. (2007). Genic microsatellite markers in plants: features and applications. Trends Biotech
  18. (1957). Ink DP: Merton Thornless as a parent in breeding thornless blackberries. Proc Amer Soc Hort Sci
  19. (2007). JM: EST-SSRs as a resource for population genetic analyses. Heredity
  20. (2005). Lewers KS: Simple sequence repeat (SSR) markers for genetic mapping of raspberry and blackberry. J Amer Soc Hort Sci
  21. (1988). Lipman DJ: Improved tools for biological sequence comparison.
  22. (2004). LJ: Analysis of gene expression associated with cold acclimation in blueberry floral buds using expressed sequence tags. Plant Science
  23. (2004). Primocane-fruiting blackberry cultivar releases from the University of Arkansas. HortScience
  24. (2007). Pruenster I: A Bayesian nonparametric method for prediction in EST analysis. Bioinformatics
  25. (2000). RW: A proposed model for inheritance of primocane fruiting in tetraploid erect blackberry. J Amer Soc Hort Sci
  26. (2005). SC: Strawberry GenBank-derived and genomic simple sequence repeat (SSR) markers and their utility with strawberry, blackberry, and red and black raspberry. J Amer Soc Hort Sci
  27. (2000). Skaletsky HJ: Primer3 on the WWW for general users and for biologist programmers.
  28. (1992). Tankesley SD: The detection and estimation of linkage in polyploids using single-dose restriction fragments. Theor Appl Genet
  29. (2007). TC: Genomic changes in resynthesized Brassica napus and their effect on gene expression and phenotype. Plant Cell
  30. (2003). The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community. Nucleic Acids Res
  31. (2004). The construction of a genetic linkage map of red raspberry (Rubus idaeus subsp. idaeus) based on AFLPs, genomic-SSR and EST-SSR markers. Theor Appl Genet
  32. (2005). type, distribution, and annotation of simple sequence repeats in Rosaceae ESTs. Funct Integr Genomics
  33. (2006). Yauk Y-K: Analyses of Expressed Sequence Tags from Apple. Plant Physiology

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