Location of Repository

Transcriptome analysis for Caenorhabditis elegans based on novel expressed sequence tags

By Heesun Shin, Martin Hirst, Matthew N Bainbridge, Vincent Magrini, Elaine Mardis, Donald G Moerman, Marco A Marra, David L Baillie and Steven JM Jones
Topics: Research Article
Publisher: BioMed Central
OAI identifier: oai:pubmedcentral.nih.gov:2474577
Provided by: PubMed Central
Download PDF:
Sorry, we are unable to provide the full text but you may find it at the following location(s):
  • http://www.pubmedcentral.nih.g... (external link)
  • Suggested articles

    Preview

    Citations

    1. (2004). A: Identification of mammalian microRNA host genes and transcription units. Genome Res
    2. (2001). AK: The role of 3'-untranslated region (3'-UTR) mediated mRNA stability in cardiovascular pathophysiology. Mol Cell Biochem
    3. (1996). Apweiler R: The SWISS-PROT protein sequence data bank and its new supplement TREMBL. Nucleic Acids Res
    4. (1998). Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res
    5. (2004). BR: Human microRNAs are processed from capped, polyadenylated transcripts that can also function as mRNAs. RNA
    6. (2002). C: A genomic view of alternative splicing.
    7. (2006). CD: Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology. BMC Genomics
    8. (2006). Computational analysis of RNAs. Cold Spring Harb Symp Quant Biol
    9. (2003). DG: Gene expression profiling of cells, tissues, and developmental stages of the nematode C. elegans. Cold Spring Harb Symp Quant Biol
    10. (2001). Dubchak I, Holbrook SR: A computational approach to identify genes for functional RNAs in genomic sequences. Nucleic Acids Res
    11. (2005). Eddy SR: C. elegans noncoding RNA genes. WormBook
    12. (2001). Eddy SR: Noncoding RNA gene detection using comparative sequence analysis.
    13. (2008). Gene expression profiling by massively parallel sequencing. Genome Res
    14. (2001). GS: A gene expression map for Caenorhabditis elegans. Science
    15. (2005). JM: Genome sequencing in microfabricated high-density picolitre reactors. Nature
    16. (2003). L: PCAP: a wholegenome assembly program. Genome Res
    17. (2007). Leto TL: Subcellular localization and function of alternatively spliced Noxo1 isoforms. Free Radic Biol Med
    18. (2007). MA: Large-scale production of SAGE libraries from microdissected tissues, flow-sorted cells, and cell lines. Genome Res
    19. (2007). Mapping the C. elegans noncoding transcriptome with a whole-genome tiling microarray. Genome Res
    20. (2006). PF: Prediction of structured non-coding RNAs in the genomes of the nematodes Caenorhabditis elegans and Caenorhabditis briggsae.
    21. (1997). Plasterk RH: An activating mutation in a Caenorhabditis elegans Gs protein induces neural degeneration. Genes Dev
    22. (2007). Schnable PS: Global gene expression analysis of the shoot apical meristem of maize (Zea
    23. Serial Analysis of Gene Expression
    24. (2003). SJ: Assessment of SAGE in transcript identification. Genome Res
    25. (2006). SJM: Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-bysynthesis approach.
    26. (2002). SK: Chromosomal clustering of muscle-expressed genes in Caenorhabditis elegans. Nature
    27. (2004). Speed TP: GOstat: find statistically overrepresented gene ontologies within a group of genes. Bioinformatics
    28. (2006). the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression. Genome Res
    29. (2005). Tollervey D: Crosstalk between RNA metabolic pathways: an RNOMICS approach. Nat Rev Mol Cell Biol
    30. (1999). Tollervey D: Functions of the exosome in rRNA, snoRNA and snRNA synthesis.

    To submit an update or takedown request for this paper, please submit an Update/Correction/Removal Request.