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Genomics of Sorghum

By Andrew H. Paterson

Abstract

Sorghum (Sorghum bicolor (L.) Moench) is a subject of plant genomics research based on its importance as one of the world's leading cereal crops, a biofuels crop of high and growing importance, a progenitor of one of the world's most noxious weeds, and a botanical model for many tropical grasses with complex genomes. A rich history of genome analysis, culminating in the recent complete sequencing of the genome of a leading inbred, provides a foundation for invigorating progress toward relating sorghum genes to their functions. Further characterization of the genomes other than Saccharinae cereals may shed light on mechanisms, levels, and patterns of evolution of genome size and structure, laying the foundation for further study of sugarcane and other economically important members of the group

Topics: Review Article
Publisher: Hindawi Publishing Corporation
OAI identifier: oai:pubmedcentral.nih.gov:2375965
Provided by: PubMed Central

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Citations

  1. (2006). A .E .F a r r e l l ,R .J .P l e v i n ,B .T .T u r n e r
  2. (2006). A .H .P a t e r s o n ,B .A .C h a p m a n ,J .C .K i s s i n g e r
  3. (2004). A .H .P a t e r s o n ,J .E .B o w e r s ,a n dB .A .C h a p m a n ,“ A n c i e n t polyploidization predating divergence of the cereals, and its consequences for comparative genomics,”
  4. (1993). A genetic linkage map of Saccharum spontaneum L.
  5. (2003). A high-density genetic recombination map of sequence-tagged sites for Sorghum, as a framework for comparative structural and evolutionary genomics of tropical grains and grasses,”
  6. (2000). A highthroughput AFLP-based method for constructing integrated genetic and physical maps: progress toward a sorghum genome map,”
  7. (2000). An integrated SSR and RFLP linkage map of Sorghum bicolor
  8. (1996). and J.C.Glaszmann,“RFLPmappingincultivatedsugarcane(Saccharum spp.): genome organization in a highly polyploid and aneuploid interspecific hybrid,”
  9. (1999). Andropogoneae evolution and generic limits in Sorghum (Poaceae) using ndhF sequences,”
  10. (2006). B e t h e l ,E .B .S c i a r a ,J .C .E s t i l l ,J .E .B o w e r s ,W .H a n n a
  11. (2005). B o w e r s ,M .A .A r i a s ,R .A s h e r ,e ta l . ,“ C o m p a r a t i v ep h y s -ical mapping links conservation of microsynteny to chromosome structure and recombination in grasses,”
  12. CGGC: an integrated web resource for sorghum,” submitted to Plant Physiology.
  13. (2002). Characterization of RFLP probe sequences for gene discovery and
  14. (2005). Chromosome identification and nomenclature of Sorghum bicolor,”
  15. (2004). Close split of sorghum and maize genome progenitors,”
  16. (1995). Comparative analysisofQTLsaffectingplantheightandmaturityacrossthe poaceae, in reference to an interspecific sorghum population,”
  17. (1992). Comparative genetic mapping of sorghum and maize,”
  18. (2004). Comparative mapping of a major aluminum tolerance gene
  19. (2004). Comparative population genetics of the panicoid grasses: sequence polymorphism, linkage disequilibrium and selection in a div e r s es a m p l eo fSorghum bicolor,”
  20. (1997). Comparisons of the molecular evolutionary process at rbcL and ndhF in the grass family
  21. (1994). Construction and characterization of a bacterial artificial chromosome library of Sorghum bicolor,”
  22. (1995). Convergent domestication of cereal crops by independent mutations at corresponding genetic loci,”
  23. (2003). Convergent evolution of perenniality in rice and sorghum,”
  24. (2002). Development and mapping of AFLP markers linked to the sorghum fertility restorer gene
  25. (2005). Diversity and selection in sorghum: simultaneous analyses using simple sequence repeats,”
  26. (2005). Equilibrium processes cannot explain high levels of short- and medium-range linkage disequilibrium in the domesticated grass Sorghum bicolor,”
  27. (1991). Estimation of nuclear DNA content of plants by flow cytometry,”
  28. (2006). Genetic map alignment and QTL correspondence between inter- and intraspecific sorghum populations,”
  29. (2002). Genetic mapping of QTLs associated with greenbug resistanceandtoleranceinSorghumbicolor,”
  30. (2003). Genetic mapping of the Sorghum bicolor vp1 gene and its relationship with preharvest sprouting resistance,”
  31. (2005). Genetic studies and a search for molecular markers that are linkedtoStrigaasiaticaresistanceinsorghum,”African
  32. (2005). Genome evolution in the genus Sorghum (Poaceae),”
  33. (2004). Genomic regions influencing resistance to the parasitic weed Striga hermonthica in two recombinant inbred populations of sorghum,”TheoreticalandAppliedGenetics,vol.109,no.5,pp. 1005–1016,
  34. (1977). H o l m ,D .L .P l u c k n e t t ,J .V .P a n c h o ,a n dJ .P .H e r b e r g e r , The World’s Worst Weeds: Distribution and Biology,
  35. (1999). h o p r a ,V .B r e n d e l ,J .Z h a n g ,J .D .A x t e l l ,a n dT .P e t e r s o n , “Molecular characterization of a mutable pigmentation phenotype and isolation of the first active transposable element from Sorghum bicolor,”
  36. (2006). Identification and characterization of RAPD and SCAR markers linked to anthracnose resistance gene in sorghum [Sorghum bicolor
  37. (2006). Identification of expression profiles of sorghum genes in response to greenbug phloem-feeding using cDNA subtraction and microarray analysis,”
  38. Identification of genomic regions for rust resistance in sorghum,”
  39. (2003). Identifications of two different mechanisms for sorghum midge resistance through
  40. (2002). Integration of cot analysis, DNA cloning, and high-throughput sequencing facilitates genome characterization and gene discovery,”
  41. (2005). Investigation of genomic organization in switchgrass (Panicum virgatumL.)usingDNAmarkers,”TheoreticalandAppliedGenetics,
  42. (2005). Isolation and characterization of resistance gene analogs (RGAs) from sorghum (Sorghum bicolor L.
  43. (1976). J.M.J.deWet,S.C.Gupta,J.R.Harlan,andC.O.Grassl,“Cytogenetics of introgression from Saccharum into
  44. (2004). M c I n t y r e ,S .M .H e r m a n n ,R .E .C a s u ,e ta l . ,“ H o m o -logues of the maize rust resistance gene Rp1-D are genetically associated with a major rust resistance QTL
  45. (2002). M e n z ,R .R .K l e i n ,J .E .M u l l e t
  46. (1999). Mapping of post flowering drought resistance traits in grain sorghum: association between QTLs influencing premature senescence and maturity,”
  47. (2002). Molecular analysis of sorghum resistance to the greenbug (Homoptera:
  48. (2006). Molecular genetic evaluation of sorghum germplasm differing in response to fungal diseases: rust (Puccinia purpurea) and anthracnose (Collectotrichum graminicola),”
  49. (2000). Molecular mapping of QTLs conferring stay-green in grain sorghum (Sorghum bicolor L.
  50. (2005). Molecular mapping of sorghum genes expressing tolerance to damage by greenbug (Homoptera:
  51. (2001). Molecular mapping of the rf1 gene for pollen fertility restoration
  52. (1994). o b r a l ,D .P .V .B r a g a ,E .S .L a H o o d ,a n dP .K e i m , “Phylogenetic analysis of chloroplast restriction enzyme site mutations in the Saccharinae griseb. subtribe of the Andropogoneae Dumort.
  53. (2000). P.K.Subudhi,D.T.Rosenow,andH.T.Nguyen,“Quantitative trait loci for the stay green trait in sorghum (Sorghum bicolor L. Moench): consistency across genetic backgrounds and environments,”
  54. (1990). Perennial grain development: past efforts and potential for the future,”
  55. (2000). QTL analysis and mapping of pre-harvest sprouting resistance in sorghum,”
  56. (2002). QTL mapping of stay-green in two sorghum recombinant inbred populations,”
  57. (2005). r e s o v i c h ,B .B a r b a z u k ,J .A .B e d e l l ,e ta l . ,“ T o w a r ds e -quencing the Sorghum genome. A U.S. National Science Foundation-sponsored workshop report,”
  58. (2005). Resistance gene analogues in sugarcane and sorghum and their association
  59. (2001). S c h e i n o s t ,D .L .L a m m e r ,X .C a i ,T .D .M u r r a y ,a n dS
  60. (2003). Segmental allotetraploidy and allelic interactions in buffelgrass (Pennisetum ciliare (L.) Link syn. Cenchrus ciliaris L.) as revealed by genome mapping,”
  61. (2005). Sorghum bicolor’s transcriptome response to dehydration, high salinity and ABA,”
  62. (1998). sorghum chromosomes: comparative organization of closely related diploid and polyploid genomes,”
  63. (2005). Sorghum expressed sequence tags identify signature genes for drought, pathogenesis, and skotomorphogenesis from a milestone set of 16,801 unique transcripts,”
  64. (2005). Sorghum genome sequencing by methylation filtration,”
  65. (1995). The weediness of wild plants: molecular analysis of genes influencing dispersal and persistence of johnsongrass,
  66. (2005). Transcriptional profiling of sorghum induced by methyl jasmonate, salicylic acid, and aminocyclopropane carboxylic acid reveals cooperative regulation and novel gene responses,”
  67. (1994). u ,C .W .M a g i l l ,K .F .S c h e rt z ,a n dG
  68. (1997). u f o u r ,M .D e u ,L .G r i v e t ,e ta l . ,“ C o n s t r u c t i o no fac o m -posite sorghum genome map and comparison with sugarcane, arelatedcomplexpolyploid,”TheoreticalandAppliedGenetics,
  69. (1996). U l a n c h ,K .L .C h i l d s ,P .W .M o r g a n ,a n dJ
  70. (1998). ultani,R.B .M eeley ,A.H.P at erson,J .G ra y
  71. (2007). Z.Xin,M.Wang,N.BarkleyJr,etal.,“Developmentofatilling population for sorghum functional genomics,”

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