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Using a logical model to predict the growth of yeast

By KE Whelan and RD King
Topics: Research Article
Publisher: BioMed Central
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Provided by: PubMed Central

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  1. (1997). A database for post-genome analysis. Trends Genet
  2. (2003). Bairoch A: ExPaSy: The proteomics server for in-depth protein knowledge and analysis.
  3. (1997). Biochemistry by numbers: simulation of biochemical pathways with Gepasi 3. Trends Biochem Sci
  4. (2002). Classification of Random Boolean Networks
  5. (1998). DB: Numerical optimisation and simulation for rational metabolic engineering.
  6. (1994). DeRaedt L: Inductive Logic Programming: Theory and Methods.
  7. (2004). Dor Reis AN, Mombach JC: Essentiality and damage in metabolic networks. Bioinformatics
  8. (1996). EcoCyc:Encyclopedia of Escherichia coli genes and metabolism. Nucleic Acid Res
  9. (2002). FJ: Dynamic Flux Balance Analysis of Diauxic Growth in Escherichia coli.
  10. (2004). Functional Genomic Hypothesis Generation and Experimentation by a Robot Scientist. Nature
  11. (2002). Functional profiling of the Saccharomyces cerevisiae genome. Nature
  12. (2003). Genome-Scale Reconstruction of the Saccharomyces cerevisiae Metabolic Network. Genome Research
  13. (2002). GM: Analysis of optimality in natural and perturbed metabolic networks.
  14. (2000). Goto S: KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res
  15. (2002). H: A Genomic Regulatory Network for Development. Science
  16. (1999). Hutchinson JC: E-CELL: software environment for whole-cell simulation. Bioinformatics
  17. (2004). JM: Saccharomyces genome database: underlying principles and organisation. Brief Bioinform
  18. (2003). JS: Advances in flux balance analysis. Current Opinion in Biotechnology
  19. (1998). Kell DB: Nonlinear optimisation of metabolic pathways: applications to metabolic engineering and parameter estimation. Bioinformatics
  20. (2003). Large Scale Evaluation of insilico gene knockouts in Saccharomyces cerevisiae Omics.
  21. (2000). Metabolic flux balance analysis and the in silico analysis of Escherichia coli K-12 gene deletions.
  22. (2002). Metabolic network structure determines key aspects of functionality and regulation. Nature
  23. (2004). Modelling and querying interaction networks in the biochemical abstract machine BIOCHAM.
  24. Mombach JC: A method to identify essential enzymes in the metabolism: application to Escherichia Coli.
  25. (2005). On the use of qualitative reasoning to simulate and identify metabolic pathways. Bioinformatics
  26. (2007). Palsson BO: Global Reconstruction of the Human Metabolic Network based on Genomic and Bibliomic Data. Proc Natl Acad Sci USA
  27. Prolog Programming for Artificial Intelligence
  28. (1994). Qualitative Reasoning
  29. (2004). Rabitz H: Optimal Identification of Biochemical Reaction Networks.
  30. (2007). Rattei T: MIPS: Analysis and annotation of genome information in
  31. (2002). Ray LB: Whole-istic Biology. Science
  32. (2001). RD: Combining inductive logic programming, active learning, and robotics to discover the function of genes.
  33. (2004). Reconstruction an Validation of Saccharomyces cerevisiae iND750, a Fully Compartmentalized Genome-Scale Metabolic Model. Genome Res
  34. (2005). Ruppin E: Regulatory on/off minimization of metabolic flux changes after genetic perturbations.
  35. (2001). SG: Developing a logical model of yeast metabolism.
  36. (2002). Systems Biology: Systems Biology: A Brief Overview. Science
  37. (2003). The Geometry of ROC Space: Understanding Machine Learning Metrics through ROC Isometrics.
  38. (2003). Troein C: Random Boolean network models and the yeast transcriptional network. Proc Natl Acad Sci USA
  39. (1999). Validation and Verification of Simulation Models.