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Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory

By Feng Luo, Yunfeng Yang, Jianxin Zhong, Haichun Gao, Latifur Khan, Dorothea K Thompson and Jizhong Zhou
Topics: Research Article
Publisher: BioMed Central
OAI identifier: oai:pubmedcentral.nih.gov:2212665
Provided by: PubMed Central
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    Citations

    1. (1998). a general reverse engineering algorithm for inference of genetic network architectures. Pac Symp Biocomput
    2. (2002). Adaptive quality-based clustering of gene expression profiles. Bioinformatics
    3. (2001). Altman RB: Missing value estimation methods for DNA microarrays. Bioinformatics
    4. (2003). Arkin AP: Biological networks.
    5. (1999). AW: From molecular to modular cell biology. Nature
    6. (2002). Barkai N: Revealing modular organization in the yeast transcriptional network. Nat Genet
    7. (2003). Biological networks: the tinkerer as an engineer. Science
    8. (1984). C: Spectral properties of the laplactian and random matrix theories. Physical Review Letter
    9. (2005). Califano A: Reverse engineering of regulatory networks in human B cells. Nat Genet
    10. (2003). Computational discovery of gene modules and regulatory networks.
    11. (1999). E: Universal and nonuniversal properties of cross correlation in financial time series. Physical Review Letters
    12. (1998). Futcher B: Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol Biol Cell
    13. (1999). Geisel T: Level fluctuations in quantum systems with multifractal eigenstates. Physical Review
    14. (2002). Gene networks from DNA microarray data: centrality and lethality.
    15. (2000). Genomic expression programs in the response of yeast cells to environmental changes. Mol Biol Cell
    16. (2005). Horvath S: A General Framework for Weighted Gene Co-Expression Network Analysis. Stat Appl Genet Mol Biol.
    17. (2003). Inferring genetic networks and identifying compound mode of action via expression profiling. Science
    18. (2000). Kohane IS: Mutual information relevance networks: functional genomic clustering using pairwise entropy measurements. Pac Symp Biocomput
    19. (1999). Kuhara S: Identification of geneticnetworks from a small number of gene expression patterns under theBoolean network model. Pac Symp Biocomput
    20. (1998). Level-spacing distribution of planar quasiperiodic tight-bindind models. Physical Review Letter
    21. (2004). Oltvai ZN: Network biology: understanding the cell's functional organization. Nat Rev Genet
    22. (1967). Random Matrices in Physics.
    23. (1990). Random Matrices. 2nd edition.
    24. (2003). Random matrix analysis of human EEG data. Phys Rev Lett
    25. (2003). Reinders MJT: Studying the conditions for learning dynamic Bayesian networks to discover genetic regulatory networks. Simulation
    26. (2002). Reverse engineering gene networks using singular value decomposition and robust regression.
    27. (2005). Reverse-engineering transcription control networks.
    28. (2003). Roychowdhury VP: Network component analysis: reconstruction of regulatory signals in biological systems. P r o c N a t l A c a d S c i U S A
    29. (1986). Shklovskii BI: Repulsion of energy-levels and the conductance of small metallic samples. Sov Phys JETP
    30. (1993). Statistical properties of the eigenvalue spectrum of the three-dimensional Anderson Hamiltonian. Physical Review B Condensed Matter
    31. (2004). Stephanopoulos G: Elucidation of gene interaction networks through time-lagged correlation analysisof transcriptional data. Genome Res
    32. (2000). Using Bayesian networks to analyze expression data.
    33. (2002). Wong WH: Transitive functional annotation by shortest-path analysis of gene expression data. Proc Natl Acad Sci USA

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