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Classification and nomenclature of all human homeobox genes

By Peter WH Holland, H Anne F Booth and Elspeth A Bruford
Topics: Research Article
Publisher: BioMed Central
OAI identifier: oai:pubmedcentral.nih.gov:2211742
Provided by: PubMed Central
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    1. (1994). A comprehensive classification of homeobox genes.
    2. (2006). A: Mohawk is a novel homeobox gene expressed in the developing mouse embryo. Dev Dynam
    3. (2002). Affara NA: The human-specific Yp11.2/Xq21.3 homology block encodes a potentially functional testis-specific TGIF-like retroposon. Mamm Genome
    4. (2003). Amphink2-tin, an amphioxus homeobox gene expressed in myocardial progenitors: insights into evolution of the vertebrate heart. Dev Biol
    5. (1997). Analysis of TALE superclass homeobox genes
    6. (2007). Annotation, nomenclature and evolution of four novel homeobox genes expressed in the human germ line. Gene
    7. (1993). AP: Sonic hedgehog, a member of a family of putative signaling molecules, is implicated in the regulation of CNS polarity. Cell
    8. (1999). Balavoine G: Hox genes in brachiopods and priapulids and protostome evolution. Nature
    9. (2001). Baxevanis AD: Molecular evolution of the homeodomain family of transcription factors.
    10. (2001). Belayew A: Active genes in junk DNA? Characterization of DUX genes embedded within 3.3 kb repeated elements. Gene
    11. (1998). Belayew A: Characterization of a double homeodomain protein (DUX1) encoded by a cDNA homologous to 3.3 kb dispersed repeated elements. Hum Mol Genet
    12. (2005). BW: Structural basis of prospero-DNA interaction: implications for transcription regulation in developing cells. Structure
    13. (2006). CC: Identification of a tandem duplicated array in the Rhox alpha locus on mouse chromosome X. Mamm Genome
    14. (2007). Comprehensive analysis of animal TALE homeobox genes: new conserved motifs and cases of accelerated evolution.
    15. (1990). Crabtree GR: HNF-1 shares three sequence motifs with the POU domain proteins and is identical to LF-B1 and APF. Genes Dev
    16. (1994). D'Andrea R: Identification of homeobox genes expressed in human haemopoietic progenitor cells. Gene
    17. (1995). DJ: Identification by differential RT-PCR of a novel paired homeodomain protein specifically expressed in sensory neurons and a subset of their CNS targets. Mol Cell Neurosci
    18. (2005). DJ: Tandem organization of independently duplicated homeobox genes in the basal cnidarian Acropora millepora. Dev Genes Evol
    19. (1992). E: Nested expression domains of four homeobox genes in developing rostral brain. Nature
    20. (1999). et al.: Nucleotide sequence of the partially deleted D4Z4 locus in a patient with FSHD identifies a putative gene within each 3.3 kb element. Gene
    21. (1997). Evolution and functional diversification of the paired box (Pax) DNA-binding domains. Mol Biol Evol
    22. (1999). Evolution of homeobox genes: Q50 Paired-like genes founded the Paired class. Dev Genes Evol
    23. (2006). Evolution of the NANOG pseudogene family in the human and chimpanzee genomes.
    24. (2005). Evolutionary change of the numbers of homeobox genes in bilateral animals. Mo Bio Evol
    25. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach.
    26. (2000). Fasano L: Vertebrate orthologues of the Drosophila region-specific patterning gene teashirt. Mech Dev
    27. (2006). Functional conservation of zinc-finger homeodomain gene zfh1/SIP1 in Drosophila heart development. Dev Genes Evol
    28. (2000). Functions of LIM-homeobox genes. Trends Genet
    29. (2006). Futerman AH: When do Lasses (longevity assurance genes) become CerS (ceramide synthases)?: Insights into the regulation of ceramide synthesis.
    30. (1993). G-JB: Molecular genetics of facioscapulohumeral muscular dystrophy. Neuromusc Dis
    31. G: The evolution of developmental mechanisms.
    32. (2003). Gascuel O: A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol
    33. (1999). Genomic cloning and characterization of the human homeobox gene SIX6 reveals a cluster of SIX genes in chromosome 14 and associates SIX6 hemizygosity with bilateral anophthalmia and pituitary anomalies. Genomics
    34. (2002). Hanash SM: Combined restriction landmark genomic scanning and virtual genome scans identify a novel human homeobox gene, ALX3, that is hypermethylated in neuroblastoma. Genes Chromosomes Cancer
    35. (1997). Homeobox genes and disease. Curr Op Genet Dev
    36. (2002). Hop is an unusual homeobox gene that modulates cardiac development. Cell
    37. (2004). Identification, cloning and expression analysis of the pluripotency promoting Nanog genes in mouse and human. Dev Dynamics
    38. (2001). IHGSC: Initial sequencing and analysis of the human genome. Nature
    39. (2006). Isolation and functional analysis of human HMBOX1, a homeobox containing protein with transcriptional repressor activity. Cytogen Genome Res
    40. (2006). JR: The cnidarian-bilaterian ancestor possessed at least 56 homeoboxes: evidence from the starlet sea anemone, Nematostella vectensis. Genome Biol
    41. (1996). KM: The evolution of the vertebrate Dlx genefamily.
    42. (2006). LM: A murine specific expansion of the Rhox cluster involved in embryonic stem cell biology is under natural selection.
    43. (2002). Loss and gain of domains during evolution of cut superclass homeobox genes.
    44. (2000). Luisi B: The virtuoso of versatility: POU proteins that flex to fit.
    45. (2006). LZ: A Gbx homeobox gene in amphioxus: insights into ancestry of the ANTP class and evolution of the midbrain/hindbrain boundary. Dev Biol
    46. (2005). Mammalian Lass6 and its related family members regulate synthesis of specific ceramides.
    47. (2006). MF: Rhox homeobox gene cluster: recent duplication of three family members. Genesis
    48. (2005). MF: Rhox: a new homeobox gene cluster. Cell
    49. (2002). MF: Two novel human X-linked homeobox genes, hPEPP1 and hPEPP2, selectively expressed in the testis. Gene
    50. (2001). MG: POU domain factors in the neuroendocrine system: lessons from developmental biology provide insights into human disease. Endocrine Rev
    51. (1997). MG: POU domain family values: flexibility, partnerships, and developmental codes. Genes Dev
    52. (2000). MJ: Human PRRX1 and PRRX2 genes: cloning, expression, genomic localization, and exclusion as disease genes for Nager syndrome. Mamm Genome
    53. (1996). Molecular cloning and characterization of human cardiac homeobox gene CSX1. Circulation Res
    54. (2000). Mouse Sebox homeobox gene expression in skin, brain, oocytes, and twocell embryos. Proc Natl Acad Sci USA
    55. (2006). NANOGP8 is a retrogene expressed in cancers.
    56. (1995). Nepveu A: DNAbinding specificity of the cut repeats from the human cut-like protein. Mol Cell Biol
    57. (2006). Ohtoshi A: Characterization of a novel prosperorelated homeobox gene,
    58. (2002). Olson EN: Modulation of cardiac growth and development by HOP, an unusual homeodomain protein. Cell
    59. (2006). Patterns of conservation and change in honey bee developmental genes. Genome Res
    60. PHYLIP: Phylogeny Inference Package (version
    61. (1997). Pseudoautosomal deletions encompassing a novel homeobox gene cause growth failure in idiopathic short stature and Turner syndrome. Nat Genet
    62. (2006). PWH: A low diversity of ANTP class homeobox genes in Placozoa. Evol Dev
    63. (2003). PWH: Chromosomal mapping of ANTP class homeobox genes in amphioxus: piecing together ancestral genomes. Evol Dev
    64. (2003). PWH: Dispersal of NK homeobox gene clusters in amphioxus and humans.
    65. (2004). PWH: Eleven daughters of NANOG. Genomics
    66. (2000). PWH: Evidence for 14 homeobox gene clusters in human genome ancestry. Curr Biol
    67. (2001). PWH: The Mnx homeobox gene class defined by HB9, MNR2 and amphioxus AmphiMnx. Dev Genes Evol
    68. (1998). PWH: The ParaHox gene cluster is an evolutionary sister of the Hox gene cluster. Nature
    69. (1998). PWH: Tripartite organization of the ancestral chordate brain and the antiquity of placodes: insights from ascidian Pax-2/5/8, Hox and Otx genes. Development
    70. (2000). R: A processed pseudogene codes for a new antigen recognized by a CD8+ T cell clone on melanoma.
    71. (2006). Remarkable expansions of an X-linked reproductive homeobox gene cluster in rodent evolution. Genomics
    72. (2005). Remodelling of the homeobox gene complement in the tunicate Oikopleura dioica. Curr Biol
    73. (1995). RG: A novel homeobox protein which recognizes a TGT core and functionally interferes with a retinoid-responsive motif.
    74. (2003). Ruddle FH: Homez, a homeobox leucine zipper gene specific to the vertebrate lineage. Proc Natl Acad Sci USA
    75. (2003). S: The mammalian Crx genes are highly divergent representatives of the Otx5 gene family, a gnathostome orthology class of orthodenticlerelated homeogenes involved in the differentiation of retinal photoreceptors and circadian entrainment. Mol Biol Evol
    76. (2007). Satoh N: Neural tube is partially dorsalized by overexpression of HrPax-37: theBMC Biology
    77. (1999). Sequence and developmental expression of amphioxus AmphiNk2-1: insights into the evolutionary origin of the vertebrate thyroid gland and forebrain. Dev Genes Evol
    78. (2000). Six family genes-structure and function as transcription factors and their roles in development. BioEssays
    79. (2005). Syrris P: Common arterial trunk associated with a homeodomain mutation of NKX2.6. Hum Mol Genet
    80. (1991). The engrailed genes: evolution of function. Semin Dev Bio
    81. (2005). The evolution of homeobox genes: implications for the study of brain development.
    82. (2004). The LIM domain: from the cytoskeleton to the nucleus. Nat Rev Mol Cell Biol
    83. (1998). The PBC domain contains a MEINOX domain: coevolution of Hox and TALE homeobox genes? Dev Genes Evol
    84. (2001). The sequence of the human genome. Science
    85. (2004). Three putative murine Teashirt orthologues specify trunk structures in Drosophila in the same way as the Drosophilateashirt gene. Development
    86. (2004). TL: BLAST: at the core of a powerful and diverse set of sequence analysis tools. Nucleic Acids Res
    87. (1991). Two members of an HNF1 homeoprotein family are expressed in human liver. Nucleic Acids Res
    88. (2000). U: Organization of mouse Iroquois homeobox genes in two clusters suggests a conserved regulation and function in vertebrate development. Genome Res
    89. (2003). Verschueren K: Organization of the mouse Zfhx1b gene encoding the two-handed zinc finger repressor Smad-interacting protein-1. Genomics

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