A cross-sectional nonhydrostatic model using idealized sill topography is used to examine the influence of bottom friction upon unsteady lee wave generation and flow in the region of a sill. The implications of changes in shear and lee wave intensity in terms of local mixing are also considered. Motion is induced by a barotropic tidal flow which produces a hydraulic transition, associated with which are convective overturning cells, wave breaking, and unsteady lee waves that give rise to mixing on the lee side of the sill. Calculations show that, as bottom friction is increased, current profiles on the shallow sill crest develop a highly sheared bottom boundary layer. This enhanced current shear changes the downwelling of isotherms downstream of the sill with an associated increase in the hydraulic transition, wave breaking, and convective mixing in the upper part of the water column. Both short and longer time calculations with wide and narrow sills for a number of sill depths and buoyancy frequencies confirm that increasing bottom friction modifies the flow and unsteady lee wave distribution on the downstream side of a sill. Associated with this increase in bottom friction coefficient, there is increased mixing in the upper part of the water column with an associated decrease in the vertical temperature gradient. However, this increase in mixing and decrease in temperature gradient in the upper part of the water column is very different from the conventional change in near-bed temperature gradient produced by increased bottom mixing that occurs in shallow sea regions as the bottom drag coefficient is increased
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