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Preprocessing of 1D gel electrophoresis image

By Matej Hlavatý

Abstract

The aim of this project is an automatic analysis of 1D gel electrophoresis results. Basic principles of gel electrophoresis and types of errors and signal noise influencing the result are studied. The proposed algorithm serves for automatic detection of lanes in the image. Summation projection on the horizontal axis is created from black-and-white digital pictures of electrophoresis. Local minima of the profile are located after smoothing the profile. In the location of these minima borders between lanes are established

Topics: mediánový filter; median filter; úprava kontrastu; contrast enhancement; Gel electrophoresis; lokálne extrémy funkcie; lane detection; function local extremes; detekcia stĺpcov; Gélová elektroforéza
Publisher: Vysoké učení technické v Brně. Fakulta elektrotechniky a komunikačních technologií
Year: 2014
OAI identifier: oai:invenio.nusl.cz:244353
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