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Nucleotide density for finding CpG islands

By Eva Sikorová

Abstract

This bachelor thesis deals with searching for CpG islands in the DNA sequences using the nucleotide density vectors. The first part includes view of the DNA structure, the genetic information expression, more detailed analysis of CpG islands and primarily their detection methods. In the practical part the algorithm for graphical representation of nucleotides on the basis of their densities and detections of CpG islands of artificially created and real DNA sequences was realized in the MATLAB program. The thesis includes the analysis of twenty sequences with the expected content of CpGIs and the comparison of results between the created program and two search engines

Topics: DNA; transcription; nukleotidová denzita; DNA methylation; CpG ostrůvky; transkripce; DNA metylace; CpG islands; nucleotide density; expression; exprese
Publisher: Vysoké učení technické v Brně. Fakulta elektrotechniky a komunikačních technologií
Year: 2013
OAI identifier: oai:invenio.nusl.cz:243538
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