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DBTBS: a database of Bacillus subtilis promoters and transcription factors

By Takahiro Ishii, Ken-ichi Yoshida, Goro Terai, Yasutaro Fujita and Kenta Nakai

Abstract

With the completion of the determination of its entire genome sequence, one of the next major targets of Bacillus subtilis genomics is to clarify the whole gene regulatory network. To this end, the results of systematic experiments should be compared with the rich source of individual experimental results accumulated so far. Thus, we constructed a database of the upstream regulatory information of B.subtilis (DBTBS). The current version was constructed by surveying 291 references and contains information on 90 binding factors and 403 promoters. For each promoter, all of its known cis-elements are listed according to their positions, while these cis-elements are aligned to illustrate their consensus sequence for each transcription factor. All probable transcription factors coded in the genome were classified with the Pfam motifs. Using this database, we compared the character of B.subtilis promoters with that of Escherichia coli promoters. Our database is accessible at http://elmo.ims.u-tokyo.ac.jp/dbtbs/

Topics: Article
Publisher: Oxford University Press
Year: 2001
OAI identifier: oai:pubmedcentral.nih.gov:29858
Provided by: PubMed Central
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