Location of Repository

Author manuscript, published in "Ninth International Conference on Parallel and Distributed Computing, Applications and Technologies, France (2008)" Efficient Parallelization of a Protein Sequence Comparison Algorithm on Manycore Architecture

By Xiaochun Ye, Van Hoa Nguyen, Dominique Lavenier and Dongrui Fan

Abstract

This paper introduces the Godson-T manycore architecture and demonstrates the efficiency of its synchronization mechanism through a computation intensive bioinformatics application: the comparison of protein banks. The parallel part of the protein sequence comparison algorithm can nearly get a linear speed-up thanks to a fine tuning of the synchronization mechanism provided by the Godson-T chip. 1

Year: 2008
OAI identifier: oai:CiteSeerX.psu:10.1.1.371.4366
Provided by: CiteSeerX
Download PDF:
Sorry, we are unable to provide the full text but you may find it at the following location(s):
  • http://citeseerx.ist.psu.edu/v... (external link)
  • http://hal.archives-ouvertes.f... (external link)
  • Suggested articles


    To submit an update or takedown request for this paper, please submit an Update/Correction/Removal Request.