Article thumbnail

Compatibility of unrooted phylogenetic trees is FPT

By David Bryant and Jens Lagergren

Abstract

AbstractA collection of T1,T2,…,Tk of unrooted, leaf labelled (phylogenetic) trees, all with different leaf sets, is said to be compatible if there exists a tree T such that each tree Ti can be obtained from T by deleting leaves and contracting edges. Determining compatibility is NP-hard, and the fastest algorithm to date has worst case complexity of around Ω(nk) time, n being the number of leaves. Here, we present an O(nf(k)) algorithm, proving that compatibility of unrooted phylogenetic trees is fixed parameter tractable (FPT) with respect to the number k of trees

Publisher: Elsevier B.V.
Year: 2006
DOI identifier: 10.1016/j.tcs.2005.10.033
OAI identifier:
Download PDF:
Sorry, we are unable to provide the full text but you may find it at the following location(s):
  • https://s3.amazonaws.com/prod-... (external link)
  • https://s3-eu-west-1.amazonaws... (external link)
  • Suggested articles


    To submit an update or takedown request for this paper, please submit an Update/Correction/Removal Request.