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Additional file 15: of Conserved and specific features of Streptococcus pyogenes and Streptococcus agalactiae transcriptional landscapes

By Isabelle Rosinski-Chupin (246239), Elisabeth Sauvage (380390), Agnès Fouet (197795), Claire Poyart (186930) and Philippe Glaser (380391)

Abstract

Figure S7. DNA sequence alignment and structure prediction of the 5′ UTR of ftsA . The DNA sequences of ftsA 5′ UTR in six streptococci were extracted from NCBI sequence database. The 5′ UTR sequence was predicted by checking for the presence of a potential − 10 box 7–9 nt upstream of the first nucleotide. Alignment and folding prediction were performed by using LocARNA ( http://rna.informatik.uni-freiburg.de/LocARNA ). Compatible base pairs are colored, where the hue shows the number of different types C-G, G-C, A-U, U-A, G-U or U-G of compatible base pairs in the corresponding columns. The saturation decreases with the number of incompatible base pairs. Accession numbers: S. agalactiae: NC_004368.1; S. gallolyticus: NC_017576.1; S. mutans: NC_004350.2; S. thermophilus: CP016877; S. uberis: NC_012004.1. (PDF 580 kb

Topics: Biophysics, Biochemistry, Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Developmental Biology, Cancer, Infectious Diseases, Virology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Regulatory RNAs, 5′ UTRs, Promoters, Operons, Regulatory network evolution, Antisense transcription
Year: 2019
DOI identifier: 10.6084/m9.figshare.7884266.v1
OAI identifier: oai:figshare.com:article/7884266
Provided by: FigShare
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