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Analysis of Brownian dynamics simulations of reversible biomolecular reactions

By J. Lipkova, K. C. Zygalakis, S. J. Chapman and R. Erban

Abstract

A class of Brownian dynamics algorithms for stochastic reaction-diffusion models which include reversible bimolecular reactions is presented and analyzed. The method is a generalization of the λ-rho model for irreversible bimolecular reactions which was introduced in [11]. The formulae relating the experimentally measurable quantities (reaction rate constants and diffusion constants) with the algorithm parameters are derived. The probability of geminate recombination is also investigated

Topics: General
Year: 2010
OAI identifier: oai:generic.eprints.org:985/core69

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