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Digital differential expression analysis of c-<i>Kit</i>, <i>Tyrp1, Tyr</i> and <i>Tyrp2</i> genes between black and white feather bulbs by RNA-Seq.

By Shijun Li (165293), Cui Wang (141700), Wenhua Yu (165296), Shuhong Zhao (48168) and Yanzhang Gong (165300)

Abstract

<p>Note: Raw-B-1, Raw data of black feather bulb expression; Raw-W-1, Raw data of white feather bulb expression; TPM-B-1, Normalized expression level of genes in black plumage feather bulb library; TPM-W-1, Normalized expression level of genes in white plumage feather bulb library; Log<sub>2</sub> ratio(W-1/B-1), log<sub>2</sub>(multiples of differentially expressed genes); P-value corresponds to differential gene expression test; FDR (False Discovery Rate) is used to determine the threshold P-value in multiple tests and analyses by manipulating the FDR value <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0036592#pone.0036592-Benjamini1" target="_blank">[27]</a>.</p

Topics: Biochemistry, Genetics, differential, genes, bulbs
Year: 2012
DOI identifier: 10.1371/journal.pone.0036592.t002
OAI identifier: oai:figshare.com:article/309260
Provided by: FigShare
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