Article thumbnail

Localization of proteins and DNA elements in 9F13 – 10B3 region of nonpolytene chromosomes (according to data of modENCODE).

By Tatyana Yu. Vatolina (342351), Lidiya V. Boldyreva (188729), Olga V. Demakova (188727), Sergey A. Demakov (342352), Elena B. Kokoza (342353), Valeriy F. Semeshin (188730), Vladimir N. Babenko (10988), Fedor P. Goncharov (188725), Elena S. Belyaeva (188724) and Igor F. Zhimulev (188732)

Abstract

<p>The positions of proteins were located as described in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0025960#s4" target="_blank">Material and Methods</a>. <b>A</b> - physical map of DNA; positions of <i>v</i> and <i>sev</i> genes are taken from FlyBase, arrows 1–4 indicate position of probes for FISH on physical map. <b>B</b> - <i>P</i>-elements density in the region calculated as number of insertions per 1 kb in 10 kb interval (data on insertions are taken from FlyBase) <b>C</b> - interband specific and active chromatin specific proteins in S2 cells <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0025960#pone.0025960-Kharchenko1" target="_blank">[48]</a>, <b>D</b> - DNase I hypersensitivity sites (DHS) in S2, BG3 and Kc cells <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0025960#pone.0025960-Kharchenko1" target="_blank">[48] </a><b>E</b> - ORC2-binding sites in S2, BG3 and Kc cultural and salivary gland cells <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0025960#pone.0025960-Eaton1" target="_blank">[59] </a><b>F</b> - histone H1 dips localization in Kc cells <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0025960#pone.0025960-Braunschweig1" target="_blank">[45] </a><b>G</b> - histone H3.3 localization in S2 cells (modENCODE, Henikoff group) <b>H</b> - 30 chromatin states in BG3 and S2 cells <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0025960#pone.0025960-Kharchenko1" target="_blank">[48]</a>, and 5 chromatin types in Kc cells <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0025960#pone.0025960-Filion1" target="_blank">[47] </a><b>I</b> - nucleosome turnover dynamics in S2 cells <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0025960#pone.0025960-Deal1" target="_blank">[60]</a>, <b>J</b> - D1 localization in Kc cells <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0025960#pone.0025960-Filion1" target="_blank">[47]</a>, <b>K</b> - SUUR localization in Kc cells <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0025960#pone.0025960-Filion1" target="_blank">[47]</a>, <b>L</b> - Lamin localization in Kc cells <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0025960#pone.0025960-Filion1" target="_blank">[47] </a><b>M</b> - early (up) and late (down) replication in S2, Kc and BG3 cells <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0025960#pone.0025960-Schwaiger1" target="_blank">[61] </a><b>N</b> - gene density (number of genes per 10 kb of DNA) <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0025960#pone.0025960-Belyakin2" target="_blank">[54]</a>.</p

Topics: Cell Biology, Genetics, proteins, dna, elements, 9f13, 10b3, nonpolytene, chromosomes
Year: 2013
DOI identifier: 10.1371/journal.pone.0025960.g002
OAI identifier: oai:figshare.com:article/396583
Provided by: FigShare
Download PDF:
Sorry, we are unable to provide the full text but you may find it at the following location(s):
  • https://figshare.com/articles/... (external link)
  • http://www.plosone.org/article... (external link)
  • http://www.plosone.org/article... (external link)
  • http://www.plosone.org/article... (external link)
  • http://www.plosone.org/article... (external link)
  • http://www.plosone.org/article... (external link)
  • http://www.plosone.org/article... (external link)
  • http://www.plosone.org/article... (external link)
  • http://www.plosone.org/article... (external link)
  • http://www.plosone.org/article... (external link)
  • http://www.plosone.org/article... (external link)
  • http://www.plosone.org/article... (external link)
  • http://www.plosone.org/article... (external link)
  • http://www.plosone.org/article... (external link)
  • Suggested articles


    To submit an update or takedown request for this paper, please submit an Update/Correction/Removal Request.