10.6084/m9.figshare.3146704.v6

Genome-wide chromatin and gene expression profiling during memory formation and maintenance in adult mice. [Data Record 6: RNA-seq]

Abstract

<u><b>DESCRIPTION<br></b>Experiment type</u> - Expression profiling by high throughput sequencing<br><u>Design</u> - Gene and exon expression changes in two distinct mouse brain regions (CA1, ACC) and three time-points (00H for naive, 01H for 1 hour, 04W for 4 weeks) before and after contextual learning (NAI for naive, CON for context, SHC for context shock).<br><br><b><u>DATA REPOSITORIES</u></b><br><u>EPIGENOME BROWSER (https://memory-epigenome-browser.dzne.de/)</u><br>Contains RNA-seq data under category "RNASEQ-DATA". Sample names include conditioning, time-point, tissue and replicate number (1 to 5; samples without numbers are merged replicates) separated by dashes. bigWig files can also be downloaded for local visualisation.<br><u>Gene Expression Omnibus (GEO)</u><br>Data is available on GEO under the accession number GSE74966 (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE74966), containing SRA and bigwig files to download for all 29 RNA-seq samples.<br><br><b><u>DATA GENERATION</u></b><br>Alignment and visualisation data was generate using the pre-processing code found in Figshare (https://dx.doi.org/10.6084/m9.figshare.3153193).<br><u><b><br></b></u

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oai:figshare.com:article/3146704Last time updated on 2/12/2018

This paper was published in FigShare.

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