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Association Study between BDNF Gene Polymorphisms and Autism by Three-Dimensional Gel-Based Microarray

By Zuhong Lu, Yunfei Bai, Xiaoyan Ke, Beili Sun, Lu Cheng, Pengfeng Xiao and Qinyu Ge

Abstract

Single nucleotide polymorphisms (SNPs) are important markers which can be used in association studies searching for susceptible genes of complex diseases. High-throughput methods are needed for SNP genotyping in a large number of samples. In this study, we applied polyacrylamide gel-based microarray combined with dual-color hybridization for association study of four BDNF polymorphisms with autism. All the SNPs in both patients and controls could be analyzed quickly and correctly. Among four SNPs, only C270T polymorphism showed significant differences in the frequency of the allele (χ2 = 7.809, p = 0.005) and genotype (χ2 = 7.800, p = 0.020). In the haplotype association analysis, there was significant difference in global haplotype distribution between the groups (χ2 = 28.19,p = 3.44e-005). We suggest that BDNF has a possible role in the pathogenesis of autism. The study also show that the polyacrylamide gel-based microarray combined with dual-color hybridization is a rapid, simple and high-throughput method for SNPs genotyping, and can be used for association study of susceptible gene with disorders in large samples

Topics: DNA microarray, single nucleotide polymorphism (SNP), autism, brain-derived neurotrophic factor (BDNF), Chemistry, QD1-999, Science, Q, DOAJ:Chemistry (General), DOAJ:Chemistry, Biology (General), QH301-705.5
Publisher: MDPI AG
Year: 2009
DOI identifier: 10.3390/ijms10062487
OAI identifier: oai:doaj.org/article:0e5d682ebada4d9f8b6cd82ca758a838
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